Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Preussia_20sp._20BSL10_20[genbank_20GCA_5F001553865.1_202016-02-09] 434 sequences; 31,475,124 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq127 255 6e-63 seq411 125 8e-24 seq157 113 5e-20 >seq127 Length=55032 Score = 255 bits (282), Expect = 6e-63 Identities = 518/758 (68%), Gaps = 12/758 (2%) Strand=Plus/Plus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACG--CGTGTCCGTGAGACGTA 53250 ||||||| || || | ||||||||||| |||||| | | || | || |||| || Sbjct 47041 TCATGCGAGTTGCTGTCGGTATCCACGGCGACGACATCGAGGCCGCGATCG--AGACCTA 47098 Query 53251 CGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTAC 53310 | ||| ||| | | ||||||||||| || ||| | || || || |||| ||| ||||| Sbjct 47099 CAACTACATGTCCAACAAGTACTTTACACATGCCTCCCCTACGCTCTTCAGCGCAGGTAC 47158 Query 53311 GAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGG 53370 ||| | ||| | || ||||||||| | | |||||||||||| || || || Sbjct 47159 CCCTCAGGCACAGCTTGCGTCCTGCTTCCTTATCGACATGAAGGATGACAGCATTGAGGG 47218 Query 53371 CATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTAT 53430 |||||||| || ||||| || ||| ||||||||| | |||||||| ||| | Sbjct 47219 TATCTACGACACTCTCAAAATCTGCGCCATGATCTCCAAGAACGCTGGTGGTATTGGTCT 47278 Query 53431 CCACTGCTCGAACG--TCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCC 53488 | || ||| | || | ||||| | || | || || || ||||| | || Sbjct 47279 CAACA-CTC-ACCGCATTCGTGCCACTGGTGCTTACATTGGCGGCACCAACGGTACCTCC 47336 Query 53489 GATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGT 53548 | || |||| || ||||| || || | ||||||||| || || |||||| |||||||| Sbjct 47337 AACGGTCTCGTTCCCATGCTTCGTGTTTACAACAACACCGCTCGTTACGTCGACCAGGGT 47396 Query 53549 GGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATG 53608 || |||||| || | || || |||||||||||||| |||||||||||||| || Sbjct 47397 GGCAACAAGCGCCCCGGTGCCTTTGCTATCTACCTCGAGCCATGGCACGCCGACATCATT 47456 Query 53609 GAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGC-CGTGACCTGTT 53667 || || || || || ||| || || | ||||| | || ||| |||||||| || Sbjct 47457 CCCTTCCTGGACCTTCGCAAGAACCACGGCAAGGAAGAAGTCCG-TGCTCGTGACCTCTT 47515 Query 53668 -TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGT 53726 ||| || |||||||| || ||| | |||||| | ||||| || ||| | ||| Sbjct 47516 CTAC-GCCCTGTGGATCCCCGACTTGTTCATGAAGCGTGTGGAACAGAACGGCAACTGGA 47574 Query 53727 ACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACG 53786 ||||||||||| ||||||||||||| || | ||||||||| |||||||| | | Sbjct 47575 CTCTGATGTGCCCTCACGAGTGCCCCGGTCTTGCCGATGTCTACGGCGAGGAGTTCGAGG 47634 Query 53787 AGATGTATCGGACGTACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGG 53846 | |||| || ||||| | ||||||| ||| || || | ||| Sbjct 47635 CGCTGTACGAGAAGTACGAGCGTGAGGGCCGTGGTCGCGAGACTATCCGCGCACAGAAGG 47694 Query 53847 TATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGG 53906 | ||| | || |||||| || ||||| ||||| || | || | |||| ||||| | Sbjct 47695 TCTGGTACGCCATCCTCGAGGCTCAGGTCGAGACCGGCAACCCCTTCATGCTTTACAAAG 47754 Query 53907 ATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGC 53944 || | | |||| |||||||||||||||||| | ||| Sbjct 47755 ATGCTGCCAACCGCAAGAGCAACCAGAAGAACCTGGGC 47792 Score = 86.0 bits (94), Expect = 7e-12 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 55478 GGCCTACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATG 55537 || || ||||||||||| ||||| || || ||||| || || || | ||||||||| Sbjct 48306 GGTCTTCGCAACTCCCTTCTCGTTGCTCCTATGCCTACTGCTAGCACTTCGCAGATCATG 48365 Query 55538 GGCAACAACGAGGCGTTCGAGCCGTACACGACCAACATCTAC 55579 ||| ||||||| |||||||||||||| | |||||||||| Sbjct 48366 GGCTTCAACGAGTGCTTCGAGCCGTACACCAGCAACATCTAC 48407 >seq411 Length=287896 Score = 125 bits (138), Expect = 8e-24 Identities = 199/280 (71%), Gaps = 4/280 (1%) Strand=Plus/Plus Query 117152 CCAGTTCCGATACCCTCTGCACCATTCATCAGAATCATCGGCACGACAGGAACGTAGAAC 117211 |||||||||||||| || ||||| || || ||||||||||| |||| ||| | ||| | | Sbjct 92808 CCAGTTCCGATACCATCCGCACCGTTGATGAGAATCATCGGAACGATAGGCATGTACACC 92867 Query 117212 TCAGGCTCCACCTGCAGACCGTCGTCCGTGACGTACTTGAGCACCGCATTGTCA-CTCGG 117270 || ||||| | |||| || || || ||| ||| |||| | | | ||| || || Sbjct 92868 TCGGGCTCGATCTGCTTGCCATCATCTGTGTTGTATGTGAGAAGAGGCTCGTCGGCTTGG 92927 Query 117271 ATCGAATATGTTCTTGGTCCACGGTGCTAGGCGAGTGAAAATGTAACGAGAGCTTGCAGC 117330 | ||| ||| | | || | || |||||| |||||||||| | ||| || || Sbjct 92928 -TGGAAGATGCGACGAGCGAAGGGAGAGAGTCGAGTGTAAATGTAACGCGCGCTGGCCGC 92986 Query 117331 ATCCTTGCCACCAGCAAGACGCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAGGTT 117390 ||||| || || |||||||| || || | ||||||||||||||| ||| | ||| Sbjct 92987 ATCCTGTCCGCCCTGAAGACGCGAGCCAAAGTTGCCACTCGGCTCCAAGCAGTTGATGTT 93046 Query 117391 GTTGGCGCCCACAAAGTTTTGAGCCAAGT-TGACAATCGT 117429 ||| | || || ||||||| | ||||| ||||||||| Sbjct 93047 GTTCGAACCGACGTAGTTTTGCG-CAAGTCCGACAATCGT 93085 Score = 107 bits (118), Expect = 2e-18 Identities = 281/426 (66%), Gaps = 2/426 (0%) Strand=Plus/Plus Query 151876 CCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAAAC 151935 || || ||||| || || |||||||||| ||||||||||| || ||||| ||| | | Sbjct 92808 CCAGTTCCGATACCATCCGCACCGTTGATGAGAATCATCGGAACGATAGGCATGTACACC 92867 Query 151936 TCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTGTCAGCCGGA 151995 || ||||| | ||| | || ||||| | |||| | | || | | ||| || | Sbjct 92868 TCGGGCTCGATCTGCTTGCCATCATCTGTGTTGTATGTGAGAAGAGGCTCGTCGGCTTGG 92927 Query 151996 TCGAATATCCGTCGAGTCATAGGACTCAAACGCGTGAAGATGTATCGGGAGCTGGCCGCA 152055 | ||| || || |||| | ||| | || ||| | ||||| || | |||||||||| Sbjct 92928 TGGAAGATGCGACGAGCGAAGGGAGAGAGTCGAGTGTAAATGTAACGCGCGCTGGCCGCA 92987 Query 152056 TCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGGTTG 152115 |||| || || || |||| ||||| | ||| ||||| | | ||||| |||| Sbjct 92988 TCCTGTCCGCCCTGAAGACGCGAGCCAAAGTTGCCACTCGGCTCCAAGCAGTTGATGTTG 93047 Query 152116 TTGGCGCCCACGAAATTCTGAGCCAAATTC-ACAATCGTGCCCTGCAGACTCGCTTCACC 152174 || | || ||| | || || | ||| | | |||||||| ||| ||| | |||||| Sbjct 93048 TTCGAACCGACGTAGTTTTGCG-CAAGTCCGACAATCGTCTGCTGGAGAGAGGTTTCACC 93106 Query 152175 GTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGTCCGT 152234 || || || ||| | | | || | || ||||| | | ||||| || ||| | Sbjct 93107 GTAAGAGTAGGCGGTCAGACCGGAGACTGAACCAGCCAATTCAACGACCTTAATATCCTT 93166 Query 152235 CGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAAACCGTC 152294 | |||||||| || || | ||| | |||||||| || ||||| || ||||| Sbjct 93167 CTTCAGGTTCCGGCGGAAGCAAGTGTAGAGAACCTTGCGTTGACCGGGTTTGAAGCCGTC 93226 Query 152295 CACCAC 152300 || || Sbjct 93227 AACGAC 93232 Score = 84.2 bits (92), Expect = 2e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 119074 ACTGAACACGTTGGCTAGCTTGGCACCGTATCCGTTCCGACCACCGGTCACGCGCTGCTC 119133 |||| | | ||||| |||||||||||||| ||||| |||||||| || || ||| Sbjct 94850 ACTGTAGATGTTGGTGAGCTTGGCACCGTAACCGTTACGACCACCAGTGACTTTGGCCTC 94909 Query 119134 CTCGTCGTTGTAGTTGGAGCTGGTCAAAAGGTGCCCAAAGATGAGCTCGGGGATCCAAAT 119193 ||||||| ||||||||| || | ||||| || || || | |||||| |||||||| Sbjct 94910 TTCGTCGTCGTAGTTGGAAGATGTGAGGAGGTGGCCGAAAATCATCTCGGGAATCCAAAT 94969 Query 119194 G 119194 | Sbjct 94970 G 94970 >seq157 Length=447866 Score = 113 bits (124), Expect = 5e-20 Identities = 323/488 (66%), Gaps = 18/488 (4%) Strand=Plus/Minus Query 74790 TCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAG 74849 || || || || | ||| |||| ||| || ||||||||||||||||| ||||| | | Sbjct 174194 TCGTTGGAGAAGGTAAGACCAGCCATGAGGCCACGCTTCTTCAACCAGAAGATAGAGGCG 174135 Query 74850 AAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAAC 74909 || || ||| |||||||||||||||||| |||||||| || || || ||||| Sbjct 174134 AACGAGCCAGAGAAGAAGATGCCTTCGACGGCAGCAAAGGCAACGAGACGGCAGGCGAA- 174076 Query 74910 GGTGCA----TCGGAAGTCATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCAGG 74965 |||| | ||| | ||||| | ||||||| ||||| ||| | | ||||| Sbjct 174075 GGTGGACTTCTCGTCGCTGATCCATCGCAGAGCCCAGTCAGC-CTTCTTACGGATGCAGG 174017 Query 74966 GACAG-TATCGATCGCTTGGAAGAGGCTTGCCTTCTCTTCGGGA--TCCTTGACGAGCTT 75022 || | | ||||| || | ||||||| | | | || ||| || ||| | | Sbjct 174016 GAATGTTGTCGATGGCGTTGAAGAGG--TACTGGCGCTGGCGGACGTCGCTGATGTAGGT 173959 Query 75023 GTCAATCATAAGTGAGTACGTCTCCGAATGAATCGACTCGTTGAACGACTGGTACGCGTA 75082 ||| || | || ||||| ||||| || || || ||| | | |||| | |||| Sbjct 173958 GTCGATGAGGAGGGAGTAGGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTA 173899 Query 75083 GAAAGACCGCGCCTCTGCAATCTGTACATC--CTTTGAAAAATTCATGTCGATATTCTCC 75140 ||| | || ||||| | ||||| || || |||| || | | | ||||| Sbjct 173898 GAAGCAGCGAGCCTCAGGGATCTGCACCTCGGAGCTGAAGCGCTC--GACAAGGTTCTCG 173841 Query 75141 ATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCA 75200 |||| |||||||| ||||||||||| || || || || | || ||| |||||| Sbjct 173840 TTGACAATGCCGTCAGAGGCGGCGAAGAAGGCGAGCACGTGTGAAATGAAGAAACGCTCA 173781 Query 75201 TCGTCAGTGA---GTTTGTCCCAATCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGACC 75257 ||||| ||| | |||| ||| || | || ||| | | |||||||||||| | Sbjct 173780 TCGTCGTTGAGACGCTTGTTCCAGTCGTGAAGATCCTTGGAGAGATCAATCTCCTCTGCT 173721 Query 75258 GTCCAGAA 75265 |||||||| Sbjct 173720 GTCCAGAA 173713 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547213031353200