Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Preussia_20sp._20BSL10_20[genbank_20GCA_5F001553865.1_202016-02-09] 434 sequences; 31,475,124 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq127 192 7e-44 seq416 185 1e-41 seq104 118 1e-21 seq98 89.7 6e-13 >seq127 Length=55032 Score = 192 bits (212), Expect = 7e-44 Identities = 571/866 (66%), Gaps = 25/866 (3%) Strand=Plus/Minus Query 80905 AGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTG 80964 || || || || ||||||||||| ||||| |||| | || |||||| ||| || ||| Sbjct 47875 AGAGAAGCAAGGTTGCACACGGCGACCTCATCAGGTGCAGTGTACTCGATGATCTCTGTG 47816 Query 80965 CACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCG 81024 ||||| || || ||| || |||||||| |||||||| |||| |||| ||| Sbjct 47815 CACAAGTTGGAGCTGCGAATGGTGCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGGCAGCA 47756 Query 81025 TCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAA 81084 || ||||| |||| | ||| | |||||||||||||| | || ||||||||||| ||| Sbjct 47755 TCTTTGTAAAGCATGAAGGGGTTGCCGGTCTCGACCTGAGCCTCGAGGATGGCGTACCAG 47696 Query 81085 ATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCGTA-AGC 81143 | || | || || || ||| ||| || | | ||||| |||| ||| Sbjct 47695 ACCTTCTGTGCGCGGATAGTCTCGCGACCACGGCCCTCACGCTCGTACTTCTCGTACAGC 47636 Query 81144 TTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCAG 81203 | ||||||| | |||| | || | || | |||||||||| |||||||||||| Sbjct 47635 -GCCTCGAACTCCTCGCCGTAGACATCGGCAAGACCGGGGCACTCGTGAGGGCACATCAG 47577 Query 81204 GTGCCAGTCGGTGTCGTTC---TCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGC 81260 ||||| || ||||| || ||| ||||||||| ||| |||||||| ||||| Sbjct 47576 AGTCCAGT---TGCCGTTCTGTTCCACACGCTTCATGAACAAGTCGGGGATCCACAGGGC 47520 Query 81261 GGTGAACAGGTCGCG-GCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAA 81319 | ||| ||||| || ||| || | || || | || ||||| ||| | || || | Sbjct 47519 GTAGAAGAGGTCACGAGCA-CGGACTTCTTCCTTGCCGTGGTTCTTGCGAAGGTCCAGGA 47461 Query 81320 AGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCCCTTGCG---AC 81376 || |||||||| || ||||||||||| || || | || | | || ||| Sbjct 47460 AGGGAATGATGTCGGCGTGCCATGGCTCGAGGTAGATAGCAAAGGCACCGGGGCGCTTGT 47401 Query 81377 GGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATAC 81436 ||||||||||| ||||||||| || || ||| | ||||| | ||| || | || || Sbjct 47400 TGCCACCCTGGTCGACGTAACGAGCGGTGTTGTTGTAAACACGAAGCATGGGAACGAGAC 47341 Query 81437 CATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCACCTTGC--TGAT 81494 | | || |||||| || || | || | || |||| || | ||| ||| Sbjct 47340 CGTTGGAGGTACCGTTGGTGCCGCCAATGTAAGCACCAGTGGCACGAA---TGCGGTGAG 47284 Query 81495 TG-AAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCAT 81553 || ||||| || ||||| | ||| || ||| || || || | || || | Sbjct 47283 TGTTGAGACCAATACCACCAGCGTTCTTGGAGATCATGGCGCAGATTTTGAGAGTGTCGT 47224 Query 81554 AAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGGGC 81613 | || ||||| ||||| || | |||||||| | | ||| ||| | | || | || Sbjct 47223 AGATACCCTCAATGCTGTCATCCTTCATGTCGATAAGGAAGCAGGACGCAAGCT--GTGC 47166 Query 81614 TTTTTGAG--CCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACAT 81671 | | | || || |||| || || |||| || || | || || ||| ||||| Sbjct 47165 CTGAGGGGTACCTGCGCTGAAGAGCGTAGGGGAGGCATGTGTAAAGTACTTGTTGGACAT 47106 Query 81672 CAGGTCATAGGTTTC-CTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTACAC 81730 || ||||| || | | || | | || ||||| ||||| ||||||| ||| || | Sbjct 47105 GTAGTTGTAGGTCTCGATCGCGGCCTCG-ATGTCGTCGCCGTGGATACCGACAGCAACTC 47047 Query 81731 GCATAAACATGTACTGGGGCGTCTCG 81756 |||| | ||||| ||| || ||||| Sbjct 47046 GCATGATCATGTGCTGTGGTCTCTCG 47021 Score = 84.2 bits (92), Expect = 2e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 80032 GCCCGCGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGC 80091 ||| | || || || ||||||||||| ||||| || || |||||| || | |||| Sbjct 48760 GCCTGTGTGCGAAGGTAGTACATGCCAGTCTTAAGACCGAGCTTCCAACCAGCAAAGTGC 48701 Query 80092 ATAGAACTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGA 80151 |||||| ||| ||| | | ||||| | || |||| |||||| || ||||| || ||| Sbjct 48700 ATAGAAGTGATCTTGCCCATGGTGGGCTCCTGCATGTGGATGTTGAGTGACTGCGATTGA 48641 Query 80152 CAGATGAAAGCCCCACGATCTGCCGCCAT 80180 ||| || || ||||| || || ||||| Sbjct 48640 TCGATAAAGGCACCACGGTCGGCGGCCAT 48612 >seq416 Length=196129 Score = 185 bits (204), Expect = 1e-41 Identities = 177/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || || ||||||||||| || || ||||| ||||| Sbjct 78443 ATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACTATCACCCTCGAGGTGGAGTCTTCC 78384 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | ||| ||||| || || |||||||||||||| |||||||| |||||| Sbjct 78383 GACACTATCGACAATGTGAAGAGCAAGATCCAGGACAAGGAGGGCATTCCTCCGGACCAG 78324 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || ||||| || |||||||||||||| | ||| || || ||||| || Sbjct 78323 CAGCGTCTGATCTTTGCCGGCAAGCAACTCGAGGACGGTCGCACTCTCAGTGACTACAAC 78264 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||||||||| ||||| || || || ||| | |||||||||||||| Sbjct 78263 ATCCAAAAGGAGTCCACGCTCCACCTCGTCCTTCGTCTTCGCGGTGG 78217 Score = 172 bits (190), Expect = 6e-38 Identities = 176/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| |||||||| || || ||||||||||| || || ||||| || ||| Sbjct 78215 ATGCAAATCTTCGTCAAGACTCTCACAGGCAAGACTATCACACTCGAGGTCGAATCATCG 78156 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | ||| | || ||||| ||||||||||| || || |||||||| Sbjct 78155 GACACCATCGACAACGTCAAGTCCAAGATTCAAGACAAGGAGGGTATCCCACCAGACCAA 78096 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || || ||||||||||| |||||||| | | ||| | | ||||| || Sbjct 78095 CAGCGCCTTATCTTCGCTGGTAAGCAGCTCGAGGACGGCAGGACCTTGTCGGACTACAAC 78036 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 |||| ||||| || |||||||| || || | |||||||||||||| || Sbjct 78035 ATCCAGAAGGAGTCGACTCTTCACCTGGTGCTCCGTCTTCGCGGTGGCCA 77986 Score = 125 bits (138), Expect = 8e-24 Identities = 153/206 (74%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 27428 TTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGG 27487 |||| || ||||| || || || ||||||||||| || | || | || ||||| Sbjct 78649 TTACGGGAAAGACCATCACCCTCGAGGTTGAGTCTTCGGACACTATCGACAACGTGAAGA 78590 Query 27488 CTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTA 27547 || || |||||||||||||| |||||||| || |||||||| || || ||||| || | Sbjct 78589 GCAAGATCCAGGACAAGGAGGGCATTCCTCCGGATCAGCAGCGCCTCATCTTTGCGGGCA 78530 Query 27548 AGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAATGTCCAAAAGGAATCCACTCTT 27606 |||| || ||||||| ||| || | ||| ||||| || | || ||||| ||||| || Sbjct 78529 AGCAGCTTGAGGATGGTCGCACTTTGAGC-GACTACAACATTCAGAAGGAGTCCACCCTC 78471 Query 27607 CATCTAGTCTTGCGTCTTCGCGGTGG 27632 || || ||| | || ||||| ||||| Sbjct 78470 CACCTCGTCCTCCGCCTTCGTGGTGG 78445 >seq104 Length=125481 Score = 118 bits (130), Expect = 1e-21 Identities = 141/190 (74%), Gaps = 1/190 (1%) Strand=Plus/Plus Query 27407 TGCAA-ATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| | ||| || ||||| || || |||||||| || || || ||||| ||||| | Sbjct 107492 TGCAACAGCTTCGTTAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCT 107551 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| ||||| || || |||||||||||||| ||||| || ||||| Sbjct 107552 GACACCATCGACAATGTGAAGAGCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAA 107611 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| | || || || || ||||| |||||||| | || ||||| | ||||| || Sbjct 107612 CAGCGCTTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAAC 107671 Query 27586 GTCCAAAAGG 27595 |||| |||| Sbjct 107672 ATCCAGAAGG 107681 >seq98 Length=448780 Score = 89.7 bits (98), Expect = 6e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 27499 GACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAG 27558 ||||||||||| || || || ||||| ||||| | || || ||||| ||||| || ||| Sbjct 219438 GACAAGGAGGGTATCCCCCCGGACCAACAGCGCTTGATCTTCGCTGGCAAGCAGCTTGAG 219497 Query 27559 GATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618 || | ||||| || | ||||| || |||| ||||| ||||| ||||| || || | Sbjct 219498 GACGGCCGTACTCTTTCGGACTACAACATCCAGAAGGAGTCCACCCTTCACCTCGTGCTC 219557 Query 27619 CGTCTTCGCGGTGG 27632 || || || ||||| Sbjct 219558 CGCCTGCGTGGTGG 219571 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570307306066080