Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Preussia_20sp._20BSL10_20[genbank_20GCA_5F001553865.1_202016-02-09] 434 sequences; 31,475,124 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq416 183 7e-41 seq104 152 1e-31 seq98 102 2e-16 seq127 100 7e-16 >seq416 Length=196129 Score = 183 bits (202), Expect = 7e-41 Identities = 173/221 (78%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||| | || || ||||||||||| ||||| || |||||||| || |||| | |||| Sbjct 77995 CGAAGACGGAGCACCAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCCGACAAGGTC 78054 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 || || || || |||||||| || |||||||||||||| |||||||| || || | || Sbjct 78055 CTGCCGTCCTCGAGCTGCTTACCAGCGAAGATAAGGCGCTGTTGGTCTGGTGGGATACCC 78114 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 |||||||| || ||||| || ||||| ||||||||||| || ||| |||||||| Sbjct 78115 TCCTTGTCTTGAATCTTGGACTTGACGTTGTCGATGGTGTCCGATGATTCGACCTCGAGT 78174 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| ||||| || ||||||||||| || || | ||||| Sbjct 78175 GTGATAGTCTTGCCTGTGAGAGTCTTGACGAAGATTTGCAT 78215 Score = 159 bits (176), Expect = 8e-34 Identities = 168/221 (76%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||| | ||||| ||||| || |||||||| ||||||||||| || || || || Sbjct 78223 CGAAGACGAAGGACGAGGTGGAGCGTGGACTCCTTTTGGATGTTGTAGTCACTGAGAGTG 78282 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | || || || || |||||||| || ||||| || || || ||||| ||||||| || Sbjct 78283 CGACCGTCCTCGAGTTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCCGGAGGAATGCCC 78342 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 ||||||||||||||||| ||||| || ||||| ||||| || || |||||||| Sbjct 78343 TCCTTGTCCTGGATCTTGCTCTTCACATTGTCGATAGTGTCGGAAGACTCCACCTCGAGG 78402 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| ||||| || ||||| ||||| || || | |||||| Sbjct 78403 GTGATAGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 78443 Score = 158 bits (174), Expect = 3e-33 Identities = 156/199 (78%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGG 210951 |||||| | ||||| ||||| || |||||||| || || ||||| || || | ||| | Sbjct 78450 ACGAAGGCGGAGGACGAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGCTCAAAG- 78508 Query 210952 TCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTC 211011 | | ||||| || ||||||||||| || ||||| ||||| || || || ||||||| | Sbjct 78509 TGCGACCATCCTCAAGCTGCTTGCCCGCAAAGATGAGGCGCTGCTGATCCGGAGGAATGC 78568 Query 211012 CTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGA 211071 | ||||||||||||||||| |||||||| ||||| ||||| || |||||||||| Sbjct 78569 CCTCCTTGTCCTGGATCTTGCTCTTCACGTTGTCGATAGTGTCCGAAGACTCAACCTCGA 78628 Query 211072 GAGTGATCGTCTTTCCCGT 211090 | ||||| ||||||||||| Sbjct 78629 GGGTGATGGTCTTTCCCGT 78647 >seq104 Length=125481 Score = 152 bits (168), Expect = 1e-31 Identities = 141/179 (79%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 || |||||||| || || | ||||| | || || || ||||||||||| |||||||| Sbjct 107679 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 107620 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 | ||| |||||||| || |||| || ||||||||||||||||| ||||| || ||| Sbjct 107619 AAGCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGCTCTTCACATTGTCG 107560 Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105 |||||||||||| || |||||||| ||||| ||||| ||||| || ||||| || || Sbjct 107559 ATGGTGTCAGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTAACGAA 107501 >seq98 Length=448780 Score = 102 bits (112), Expect = 2e-16 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || |||||||| |||||||| || |||||||| || |||| ||| || | || || Sbjct 219556 AGCACGAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTACGGCCGTCC 219497 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTC 211021 || ||||||||||| |||||||| | ||| |||||||| || || | || |||||||| Sbjct 219496 TCAAGCTGCTTGCCAGCGAAGATCAAGCGCTGTTGGTCCGGGGGGATACCCTCCTTGTC 219438 >seq127 Length=55032 Score = 100 bits (110), Expect = 7e-16 Identities = 186/273 (68%), Gaps = 0/273 (0%) Strand=Plus/Minus Query 178093 GTTCTTTTGGTTGCTCTTTCTGCAAATGGCATCTTTGTACGCAATGAAGGGCATTCCCAC 178152 |||||| ||||||||||| | | ||||||||||| |||||||| | || Sbjct 47786 GTTCTTCTGGTTGCTCTTGCGGTTGGCAGCATCTTTGTAAAGCATGAAGGGGTTGCCGGT 47727 Query 178153 CTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAGTCTTTTTGGC 178212 ||| | |||||| |||| ||| | ||| | || ||| || |||| ||||| | Sbjct 47726 CTCGACCTGAGCCTCGAGGATGGCGTACCAGACCTTCTGTGCGCGGATAGTCTCGCGACC 47667 Query 178213 TTTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAGACATCATC 178272 || ||| ||||||||| | ||| ||| ||||||| ||| || |||||||| | Sbjct 47666 ACGGCCCTCACGCTCGTACTTCTCGTACAGCGCCTCGAACTCCTCGCCGTAGACATCGGC 47607 Query 178273 GAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCGTCTTCCTTCACTCGTTT 178332 |||||||| ||| | ||||| | ||| |||| | |||| | | ||| || || Sbjct 47606 AAGACCGGGGCACTCGTGAGGGCACATCAGAGTCCAGTTGCCGTTCTGTTCCACACGCTT 47547 Query 178333 CATGAAGAGGTCAGAGGTCCAGATGGCATAGAA 178365 |||||| | ||| | | |||| | ||| ||||| Sbjct 47546 CATGAACAAGTCGGGGATCCACAGGGCGTAGAA 47514 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159145554390410