Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudocercospora_20musae_20[genbank_20GCA_5F001578225.1_202016-03- 01] 3,331 sequences; 60,439,160 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq2619 141 1e-28 >seq2619 Length=45072 Score = 141 bits (156), Expect = 1e-28 Identities = 550/854 (64%), Gaps = 18/854 (2%) Strand=Plus/Minus Query 23844 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT 23903 || ||||| ||||| ||||| || ||||| || || || || || ||| || || || Sbjct 30031 TTCTGGTAGTCACCAACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCTAGAGAAATGTTC 29972 Query 23904 TCCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAATCCCAATTCAGAA-AT 23962 |||||||||||| |||| ||||| | || |||| ||| | | |||| | | || | Sbjct 29971 TCCATGAAATCGAATGGGTTGGTGGCGTTGTAGAA-CTTCTGATTCCCGAGTGCCAACAA 29913 Query 23963 CAATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 24022 || | || ||||||||||| || || ||| | | | |||||| || | || Sbjct 29912 CAGACGGTCCGCGACAAACTCGATGTACTGGCACATGAGCTTAGCATTCATGCCGAGGAG 29853 Query 24023 TTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAAT 24082 | ||||| || || | || || |||||||| ||||| | || || || || || Sbjct 29852 CATGACTGGGAGCGCATCTGTGAGGAATTCTTGCTCAATCGCAACAGCTTCAACGATGAT 29793 Query 24083 AGATCTT----ACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATG 24138 | ||| | || | | || | | | | | | | || |||| || |||| Sbjct 29792 -GCTCTGCACGAGTGATGCGTC--TGGCTTGTT-CTTGAGGTGAGAGAACAGCAGGCATG 29737 Query 24139 CGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGG 24198 |||| || ||| | |||||||| | || ||||| || || || || || |||| Sbjct 29736 CGAAGTCTGTGTGCATGCCCTCGTCACGCGAGATCAATTCATTCGAGAATGTAAGACCGG 29677 Query 24199 GCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTC 24258 |||| ||||||||||| || | ||| || ||||| || || || ||||| ||||| || | Sbjct 29676 GCATGAGGCCACGCTTCTTCAACCAGAAGATGGATGCGAAAGAACCAGAGAAGAAGATGC 29617 Query 24259 CTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCG---CTGTCATGTATCC 24315 | || || || || ||||| || | || || || | | ||||| |||| Sbjct 29616 CCTCGACGGCAGCGAAGGCGATCAATCGGCAGGCAAAAGTCGAGTTCTTGTCAGAGATCC 29557 Query 24316 ACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGA 24375 | ||||| || |||||||| | ||| || || | || || || || |||| Sbjct 29556 ATCGCAATGCCCAGTCAGCCTTCTTACGGATACATGGGATGTTGTCGATGGCGTTGAAGA 29497 Query 24376 GATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCG 24435 |||| | | || || | | || || || || | || || |||||| Sbjct 29496 GATATGATCGCTGCTTGGGTTCGCTGATGTAGGTGTCGATAAGCAGGGAGTATGTTTCCG 29437 Query 24436 AATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTA 24495 | || ||||| || || || || ||||||||||| |||| || |||| ||||||| Sbjct 29436 AGTGGATGTTCTCCATCATGATCTGGAATCCGTAGAAGCATCGTGCTTCGGGTATCTGTA 29377 Query 24496 CTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAA 24555 |||| | || || || | | || ||||| || ||||||||| || || || | Sbjct 29376 CTTCACCGCTGAAGCGCTCAACCAGGTTCTCATTGACAATTCCGTCAGATGCGGCGAAGA 29317 Query 24556 ACGCCAATACATGTTTTATAAAATATTTTTCGTC-TGGTGTTAGT---TTATTCCAATCA 24611 | || | |||||| || || ||| ||||| | || | ||| || ||||| || Sbjct 29316 AAGCAAGGACATGTGAGATGAAGTATCGCTCGTCATCGT-TCAGTCTCTTGTTCCAGTCG 29258 Query 24612 TTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTA 24671 | | || || || | ||| | || || | ||||| || ||||| || ||||| || Sbjct 29257 TGAAGGTCCTTGGACAGATCAATCTCCTCAGCGGTCCAGAAGGATGCTTCGGCCTTCTTG 29198 Query 24672 TACATATTCCAGAT 24685 ||||| | ||| || Sbjct 29197 TACATCTGCCATAT 29184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593696878916880