Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudocercospora_20musae_20[genbank_20GCA_5F001578225.1_202016-03- 01] 3,331 sequences; 60,439,160 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq1001 123 2e-23 seq224 82.4 5e-11 >seq1001 Length=158095 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || ||||| | ||||||| ||| | ||| || || ||||| |||||||||||| Sbjct 24560 TCCACCACGCAGACGGAGCACCAAGTGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCT 24619 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 || ||| |||| || | ||||||||| ||||| ||||| ||||||||||| || Sbjct 24620 CAATGTCCGGCCGTCCTCAAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCTGGTGG 24679 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || ||||||||| ||||| ||| | || | | || | || | ||||| || Sbjct 24680 GATGCCCTCCTTGTCTTGAATCTTCGACTTGACATTGTCGATGGTGTCTGAAGATTCCAC 24739 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||||| || |||||||| || || || || ||||| ||||| Sbjct 24740 TTCTAGTGTGATAGTCTTGCCGGTAAGTGTCTTGACGAAGATTTGCAT 24787 Score = 95.1 bits (104), Expect = 8e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || || ||||| | ||| || ||||| |||||||||||||||| ||| |||| Sbjct 24804 AGGACAAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAAGGTCCGGCCGTCC 24863 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | ||||||||| ||||| || | ||||||||||| || | | ||||||||| Sbjct 24864 TCGAGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCTGGTGGAATACCCTCCTTGTCT 24923 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | || | | || | |||| || || || || | ||||| || Sbjct 24924 TGGATCTTGGACTTGACATTGTCAATAGTGTCGGAAGACTCAACCTCGAGGGTGATAGTC 24983 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || ||||| || || || ||||| ||||| Sbjct 24984 TTTCCAGTGAGCGTCTTGACGAAGATTTGCAT 25015 Score = 82.4 bits (90), Expect = 5e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || |||||||| | || || ||||| | || || ||||| ||||||||||| || Sbjct 25017 CCACCGCGCAGGCGGAGGACAAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCAGAG 25076 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || || | |||||||| ||||||||||| |||||||| || || Sbjct 25077 AGAGTGCGGCCATCCTCGAGTTGCTTGCCGGCGAAAATGAGACGCTGCTGATCCGGAGGA 25136 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | |||||||| ||||| ||| | || | | || | |||| || || || Sbjct 25137 ATTCCTTCCTTGTCCTGGATCTTGCTCTTCACATTGTCGATAGTGTCGGAGGACTCAACC 25196 Query 34343 TCCACCGTGATGGTTTTGCCGGT 34365 || | |||||||| |||||||| Sbjct 25197 TCGAGGGTGATGGTCTTGCCGGT 25219 >seq224 Length=177688 Score = 82.4 bits (90), Expect = 5e-11 Identities = 134/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 34202 TTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATG 34261 || || ||||||||||| |||| ||| | || ||||| ||||| || ||||| || Sbjct 19043 TTTTGGATGTTGTAGTCAGACAAAGTGCGGCCATCCTCCAATTGCTTTCCAGCGAAGATC 19102 Query 34262 AGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCT 34321 || ||||||||||| || | | ||||||||| ||||| ||| | || | Sbjct 19103 AGACGCTGCTGGTCCGGTGGAATTCCCTCCTTGTCCTGAATCTTGCTCTTGACATTATCG 19162 Query 34322 ATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAG 34381 || | |||| || ||||| || | |||||||| ||||| ||||| || || || ||| Sbjct 19163 ATGGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAG 19222 Query 34382 ATCTGCATCGCT 34393 ||| ||| || Sbjct 19223 --CTGTATCTCT 19232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323058884387360