Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudocercospora_20musae_20[genbank_20GCA_5F001578225.1_202016-03- 01] 3,331 sequences; 60,439,160 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq2619 138 1e-27 >seq2619 Length=45072 Score = 138 bits (152), Expect = 1e-27 Identities = 373/567 (66%), Gaps = 8/567 (1%) Strand=Plus/Minus Query 33573 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAA 33632 |||| || |||||||| || ||||| |||||||| | || ||||| || || Sbjct 29749 AACAGCAGGCATGCGAAGTCTGTGTGCATGCCCTCGTCACGCGAGATCAATTCATTCGAG 29690 Query 33633 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCG 33692 || || || |||||||| ||||||||||| || | ||| || ||||| ||||| || || Sbjct 29689 AATGTAAGACCGGGCATGAGGCCACGCTTCTTCAACCAGAAGATGGATGCGAAAGAACCA 29630 Query 33693 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCG--- 33749 || |||||||| || || || ||||| ||||| || | || || || | | Sbjct 29629 GAGAAGAAGATGCCCTCGACGGCAGCGAAGGCGATCAATCGGCAGGCAAAAGTCGAGTTC 29570 Query 33750 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 33809 ||||| ||||| ||||| || |||||||| | ||| || || | || Sbjct 29569 TTGTCAGAGATCCATCGCAATGCCCAGTCAGCCTTCTTACGGATACATGGGATGTTGTCG 29510 Query 33810 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGA 33869 ||||| || |||||||| | | || || | | || || ||||| | || Sbjct 29509 ATGGCGTTGAAGAGATATGATCGCTGCTTGGGTTCGCTGATGTAGGTGTCGATAAGCAGG 29450 Query 33870 CTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCC 33929 || ||||||| || ||||| || || ||||| ||||||||||| |||| || Sbjct 29449 GAGTATGTTTCCGAGTGGATGTTCTCCATCATGATCTGGAATCCGTAGAAGCATCGTGCT 29390 Query 33930 TCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCA 33989 |||| ||||| ||||| | || || || | | || ||||| || ||||| ||| Sbjct 29389 TCGGGTATCTGTACTTCACCGCTGAAGCGCTCAACCAGGTTCTCATTGACAATTCCGTCA 29330 Query 33990 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC-TGGTGTTAGT-- 34046 || || || || || | |||||| || || ||| ||||| | || | ||| Sbjct 29329 GATGCGGCGAAGAAAGCAAGGACATGTGAGATGAAGTATCGCTCGTCATCGT-TCAGTCT 29271 Query 34047 -TTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGC 34105 || ||||| || | | || || || | ||| | || || | ||||| || ||||| Sbjct 29270 CTTGTTCCAGTCGTGAAGGTCCTTGGACAGATCAATCTCCTCAGCGGTCCAGAAGGATGC 29211 Query 34106 CTCTGCCTTTTTATACATATTCCAGAT 34132 || ||||| || ||||| | ||| || Sbjct 29210 TTCGGCCTTCTTGTACATCTGCCATAT 29184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629791375969680