Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudocercospora_20musae_20[genbank_20GCA_5F001578225.1_202016-03- 01] 3,331 sequences; 60,439,160 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq2619 120 4e-22 >seq2619 Length=45072 Score = 120 bits (132), Expect = 4e-22 Identities = 544/853 (64%), Gaps = 16/853 (2%) Strand=Plus/Minus Query 35867 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT 35926 || ||||| ||||| ||||| || ||||| || || || || || ||| || || || Sbjct 30031 TTCTGGTAGTCACCAACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCTAGAGAAATGTTC 29972 Query 35927 TCCATGAAATCGAATGGATTGATAACATTATAAAtttttttAAATCCCAATTCAGAAATC 35986 ||||||||||||||||| ||| | | || || | || | | || | | | | | | Sbjct 29971 TCCATGAAATCGAATGGGTTGGTGGCGTTGTAGAACTTCTGATTCCCGAGTGCCAACAAC 29912 Query 35987 AATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 36046 | | || |||||||| || || || ||| | | | |||||| || | || Sbjct 29911 AGACGGTCCGCGACAAACTCGATGTACTGGCACATGAGCTTAGCATTCATGCCGAGGAGC 29852 Query 36047 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATA 36106 | ||||| || || | || || |||||||| ||||| | || || || || || Sbjct 29851 ATGACTGGGAGCGCATCTGTGAGGAATTCTTGCTCAATCGCAACAGCTTCAACGATGAT- 29793 Query 36107 GATATT----ACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGC 36162 | | | | || | | || | | | | | | | || |||| || ||||| Sbjct 29792 GCTCTGCACGAGTGATGCGTC--TGGCTTGTT-CTTGAGGTGAGAGAACAGCAGGCATGC 29736 Query 36163 GAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGG 36222 ||| || ||| | |||||||| | || ||||| || || || || || ||||| Sbjct 29735 GAAGTCTGTGTGCATGCCCTCGTCACGCGAGATCAATTCATTCGAGAATGTAAGACCGGG 29676 Query 36223 CATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCC 36282 ||| ||||||||||| || | ||| || ||||| || || || ||||| ||||| || || Sbjct 29675 CATGAGGCCACGCTTCTTCAACCAGAAGATGGATGCGAAAGAACCAGAGAAGAAGATGCC 29616 Query 36283 TTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAA--CCGGCAC-TGTCATGTATCCA 36339 || || || || ||||| || | || || || | | | ||||| ||||| Sbjct 29615 CTCGACGGCAGCGAAGGCGATCAATCGGCAGGCAAAAGTCGAGTTCTTGTCAGAGATCCA 29556 Query 36340 CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAG 36399 ||||| || |||||||| | ||| || || | || || || || ||||| Sbjct 29555 TCGCAATGCCCAGTCAGCCTTCTTACGGATACATGGGATGTTGTCGATGGCGTTGAAGAG 29496 Query 36400 ATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGA 36459 ||| | | || || | | || || || || | || || ||||||| Sbjct 29495 ATATGATCGCTGCTTGGGTTCGCTGATGTAGGTGTCGATAAGCAGGGAGTATGTTTCCGA 29436 Query 36460 ATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTAC 36519 || ||||| || || || || ||||||||||| |||| || |||| |||||||| Sbjct 29435 GTGGATGTTCTCCATCATGATCTGGAATCCGTAGAAGCATCGTGCTTCGGGTATCTGTAC 29376 Query 36520 TTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAA 36579 ||| | || || || | | || ||||| || ||||||||| || || || || Sbjct 29375 TTCACCGCTGAAGCGCTCAACCAGGTTCTCATTGACAATTCCGTCAGATGCGGCGAAGAA 29316 Query 36580 CGCCAATACATGTTTTATAAAATATTTTTCGT-TTGGTGTTAGT---TTATTCCAATCAT 36635 || | |||||| || || ||| |||| | || | ||| || ||||| || | Sbjct 29315 AGCAAGGACATGTGAGATGAAGTATCGCTCGTCATCGT-TCAGTCTCTTGTTCCAGTCGT 29257 Query 36636 TGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTAT 36695 | || || || | ||| | || || | ||||| || ||||| || ||||| || | Sbjct 29256 GAAGGTCCTTGGACAGATCAATCTCCTCAGCGGTCCAGAAGGATGCTTCGGCCTTCTTGT 29197 Query 36696 ACATATTCCAGAT 36708 |||| | ||| || Sbjct 29196 ACATCTGCCATAT 29184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658145395330040