Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudocercospora_20musae_20[genbank_20GCA_5F001578225.1_202016-03- 01] 3,331 sequences; 60,439,160 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq2619 271 1e-67 seq1779 113 7e-20 >seq2619 Length=45072 Score = 271 bits (300), Expect = 1e-67 Identities = 578/845 (68%), Gaps = 25/845 (3%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| | |||||||| ||||| | || ||||| ||||| | || ||| | |||||| Sbjct 29184 ATATGGCAGATGTACAAGAAGGCCGAAGCATCCTTCTGGACCGCTGAGGAGATTGATCTG 29243 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 ||||||||||| |||| ||| | | | ||| || |||||| | || || || Sbjct 29244 TCCAAGGACCTTCACGACTGGAACAAGAGACTGAACGATGACGAGCGATACTTCATCTCA 29303 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTG-TTGACACG 125197 || | | || ||||| |||| || || ||||| ||||| || || ||| |||| || Sbjct 29304 CATGTCCTTGCTTTCTTCGCCGCATCTGACGGAATTGTCAATGAGAACCTGGTTGAG-CG 29362 Query 125198 ATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGAT 125257 ||| || | || || || | ||||| ||||||||||| |||||||| Sbjct 29363 CTTCAGCGGTGAAGTACAGATACCCGAAGCACGATGCTTCTACGGATTCCAGATCATGAT 29422 Query 125258 TGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCC--- 125314 |||||| | |||||||||| ||||| || || |||| ||||| |||| || Sbjct 29423 GGAGAACATCCACTCGGAAACATACTCCCTGCTTATCGACACCTACATCAGCGAACCCAA 29482 Query 125315 GCAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGC 125374 ||| || | || || ||||| ||||| ||||||| | || | ||| ||||| ||||| Sbjct 29483 GCAGCG--ATCATAT-CTCTTCAACGCCATCGACAACATCCCATGTATCCGTAAGAAGGC 29539 Query 125375 TCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGC 125434 | | |||| | || |||||| |||| | || || | | ||| | || || | || Sbjct 29540 TGACTGGGCATTGCGATGGATCTCTGACAAGAACTCGACTTTTGCCTGCCGATTGATCGC 29599 Query 125435 ATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAA 125494 ||||| ||||| |||||||||||||| || ||| ||| || ||||||| ||| | || Sbjct 29600 CTTCGCTGCCGTCGAGGGCATCTTCTTCTCTGGTTCTTTCGCATCCATCTTCTGGTTGAA 29659 Query 125495 GAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGG 125554 |||||| || ||||||||||| || || | || || || || || || |||||||| Sbjct 29660 GAAGCGTGGCCTCATGCCCGGTCTTACATTCTCGAATGAATTGATCTCGCGTGACGAGGG 29719 Query 125555 CCTACACTGTGACTTTGCCATTCTACTGTT-TCGCAACT-ATCTGCGTCCCGAGTGCAGA 125612 | | ||| ||||| || || ||||| || || || | | || || | | Sbjct 29720 CATGCACACAGACTTCGCATGCCTGCTGTTCTCTCACCTCAAGAACAAGCC-AG-ACGCA 29777 Query 125613 TCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTT 125672 || || || | || ||||| | ||| | | | ||| ||| || ||||| || Sbjct 29778 TCACTCG-TGCAGAG--CATCATCGTTGAAGCTGTTGC------GATTGAGCAAGAATTC 29828 Query 125673 CTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGC-AAGCTAATGTGCGAGTA 125731 || || || | || || |||| | | |||||||| ||| ||||| |||||| |||| Sbjct 29829 CTCACAGATGCGCTCCCAGTCATGCTCCTCGGCATGAA-TGCTAAGCTCATGTGCCAGTA 29887 Query 125732 CATAGAGTTTGTGGCAGATCGTCTACTGTACG-AGTTGATTGGCCGCAAGATTTACAACG 125790 ||| |||||||| || || ||||| ||| | | | | | | ||| | ||||||| Sbjct 29888 CATCGAGTTTGTCGCGGACCGTCTGTTGTTGGCACTCGGGAATCAG-AAGTTCTACAACG 29946 Query 125791 CCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTTCG 125850 ||| || || || ||||||||| | ||| || |||| || ||||||||||| |||| Sbjct 29947 CCACCAACCCATTCGATTTCATGGAGAACATTTCTCTAGGCGGCAAGACCAACTTCTTCG 30006 Query 125851 AGAAG 125855 ||||| Sbjct 30007 AGAAG 30011 >seq1779 Length=148467 Score = 113 bits (124), Expect = 7e-20 Identities = 374/570 (66%), Gaps = 14/570 (2%) Strand=Plus/Plus Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATG-CAATGTCACG 96865 || ||||||| ||| || || || || ||||| | | ||||| || || | || Sbjct 97314 ACGAACGGCACGTCCAACGGACTGGTTCCTATGCTGCGTGTCTACAACAACACTG-CTCG 97372 Query 96866 ATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTG 96925 |||||| ||||| ||||| || || || || || | ||| | ||| | || || || Sbjct 97373 CTACGTTGACCAGGGTGGCAACAAGCGCCCCGGTGCCTTTGCCATTTACCTCGAGCCATG 97432 Query 96926 GCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACG 96985 |||||| || ||| | | || || || | ||||| ||| |||| || |||| || Sbjct 97433 GCACGCTGATGTTCTGGCATTCATGGATCTCCGCAAGAACCATGGCAAAGAGGAGGTGCG 97492 Query 96986 AGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGA 97045 ||| | ||| | || | ||||| ||| | || ||| ||||||||||||| || | || Sbjct 97493 CGCCCGCGACCTTTTCTTCGCACTTTGGATCCCGGATCTGTTCATGAAGCGTGTTGAGGA 97552 Query 97046 CGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGG 97105 ||| | |||| ||| |||||||| | || || ||||| | ||| | || Sbjct 97553 GAACGGCGAGTGGACCCTCATGTGCCCGAATGAGTGCCCTGGTCTCGCAGATGTTTATGG 97612 Query 97106 CGAAGAGTTTGAGGCCAAG---TACACGGCCTACGAGCAAGAGGGCCG-ATACGTGAGAC 97161 ||| || || ||| ||| ||| | |||||| | ||||| || || ||||| Sbjct 97613 CGAGGACTTCGAG---AAGCTCTACGAGCAGTACGAGAAGGAGGGTCGTGGCCGCGAGAC 97669 Query 97162 GAGTCGATGCACGAGAA-CTGTGGAAGGCCA-TCGTGACGGCTCAGGTAGAGACTGGAAC 97219 ||| || | |||| | ||| | |||| || ||| ||||||| ||||| || Sbjct 97670 TGTTCG-CGC-CCAGAAGATCTGGTATGCCATTCTTGA-GGCTCAGACGGAGACCGGCGG 97726 Query 97220 TCCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCAC 97279 || | ||| || ||||||||| | || ||||| |||||||| || | || || Sbjct 97727 CCCTTTCATCCTTTACAAGGATGCTTGCAACCGCAAGAGCAACCAGAAGAACCTTGGTAC 97786 Query 97280 CATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGC 97339 ||| | || || || ||||| || || | |||||| | |||| || ||| ||| Sbjct 97787 AATCCGCAGTTCTAACCTCTGCACTGAGATCATCGAGTACTCTGCTCCAGATGAGGTGGC 97846 Query 97340 AGTTTGCGTTCTGGCATCGGTCAATCTGCC 97369 || ||| || || ||| || |||||| Sbjct 97847 TGTCTGCAACCTTGCTTCGATCGCTCTGCC 97876 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741028344147560