Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudocercospora_20musae_20[genbank_20GCA_5F001578225.1_202016-03- 01] 3,331 sequences; 60,439,160 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq1001 82.4 6e-11 >seq1001 Length=158095 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| || || || ||||||||||| || |||||||| || |||| || ||||||| Sbjct 24578 CACCAAGTGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAATGTCCGGCCGTCCTC 24637 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 |||||||| || || | || | |||||||| || || | | |||||||| Sbjct 24638 AAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCTGGTGGGATGCCCTCCTTGTCTTG 24697 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 ||| ||| ||||| | | ||||| || | ||| ||| || | ||| || || || Sbjct 24698 AATCTTCGACTTGACATTGTCGATGGTGTCTGAAGATTCCACTTCTAGTGTGATAGTCTT 24757 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||| || || || || || || ||||| Sbjct 24758 GCCGGTAAGTGTCTTGACGAAGATTTGCAT 24787 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421234098649331