Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudocercospora_20musae_20[genbank_20GCA_5F001578225.1_202016-03- 01] 3,331 sequences; 60,439,160 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq1001 116 3e-21 seq2619 111 1e-19 seq2223 89.7 5e-13 seq224 89.7 5e-13 >seq1001 Length=158095 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || | || | || |||||||| || |||||||| ||| | Sbjct 24789 CCACCACGGAGACGAAGGACAAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 24848 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || |||||| ||||||||||| ||| |||| || ||||||||||| || || Sbjct 24849 AAGGTCCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCTGGTGGA 24908 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||||| | || | ||| |||| ||||| | Sbjct 24909 ATACCCTCCTTGTCTTGGATCTTGGACTTGACATTGTCAATAGTGTCGGAAGACTCAACC 24968 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| ||| | || || || || || || || ||||| || ||||| Sbjct 24969 TCGAGGGTGATAGTCTTTCCAGTGAGCGTCTTGACGAAGATTTGCAT 25015 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||||| || || || | || | ||| |||||||| ||||||||||| || Sbjct 25017 CCACCGCGCAGGCGGAGGACAAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCAGAG 25076 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||||| || |||||||| ||| | || | ||||||||| |||||||| Sbjct 25077 AGAGTGCGGCCATCCTCGAGTTGCTTGCCGGCGAAAATGAGACGCTGCTGATCCGGAGGA 25136 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 |||||||| ||||| ||| || ||| | | || | ||| |||| |||||| | Sbjct 25137 ATTCCTTCCTTGTCCTGGATCTTGCTCTTCACATTGTCGATAGTGTCGGAGGACTCAACC 25196 Query 131188 TCGACGGTAACGGTTTTACCGGT 131210 |||| ||| | ||| || ||||| Sbjct 25197 TCGAGGGTGATGGTCTTGCCGGT 25219 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||| ||||| || || | || |||||| || |||||||| |||||| Sbjct 24561 CCACCACGCAGACGGAGCACCAAGTGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 24620 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || |||||| ||||||||||| ||| |||| | ||||||||||| || ||| Sbjct 24621 AATGTCCGGCCGTCCTCAAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCTGGTGGG 24680 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| || ||| ||||| | || | || || | || || | Sbjct 24681 ATGCCCTCCTTGTCTTGAATCTTCGACTTGACATTGTCGATGGTGTCTGAAGATTCCACT 24740 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | || || ||||| || || || ||||| || ||||| Sbjct 24741 TCTAGTGTGATAGTCTTGCCGGTAAGTGTCTTGACGAAGATTTGCAT 24787 >seq2619 Length=45072 Score = 111 bits (122), Expect = 1e-19 Identities = 328/501 (65%), Gaps = 5/501 (1%) Strand=Plus/Plus Query 46096 CGCAAGAAAACCGACTGGGCGATGAAGTGGATCAACAGCAGCACCGCGACTTTCGCCGAG 46155 || ||||| | |||||||| || |||||| || | | ||||||| ||| Sbjct 29529 CGTAAGAAGGCTGACTGGGCATTGCGATGGATCTCTGACAAGAACTCGACTTTTGCCTGC 29588 Query 46156 CGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGTTTTGCCGCCATC 46215 || || | ||||| || || |||||| |||| || ||||| ||| || ||||| Sbjct 29589 CGATTGATCGCCTTCGCTGCCGTCGAGGGCATCTTCTTCTCTGGTTCTTTCGCATCCATC 29648 Query 46216 TTTTACATCAAAACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAACGAGCTGATATCG 46275 || | | || | ||| |||||||||| || || || || || |||| ||| Sbjct 29649 TTCTGGTTGAAGAAGCGTGGCCTCATGCCCGGTCTTACATTCTCGAATGAATTGATCTCG 29708 Query 46276 CGCGACGAGGGCCTGCATACGGACTTTGCGTGTCTCTACTATAACACTCGCGTGCACGAC 46335 || ||||||||| |||| || ||||| || || || || | | ||| | | | || Sbjct 29709 CGTGACGAGGGCATGCACACAGACTTCGCATGCCTG--CTGTT-CTCTCACCTCAAGAAC 29765 Query 46336 AAGCTTGCGCCCGACAC-CGTGCTGAGCATGTTCAAGGAGGCGGTGGCCATTGAGAAGGA 46394 |||| | | | ||| ||||| |||||| || || || || || |||||| | || Sbjct 29766 AAGCCAGA-CGCATCACTCGTGCAGAGCATCATCGTTGAAGCTGTTGCGATTGAGCAAGA 29824 Query 46395 GTTTTTTACGGCCGCACTGCCCGCTGCCCTGCTGGGCATGAACGCACAGTCAATGTGCGA 46454 || | || | || || || | || || |||||||| || || |||||| | Sbjct 29825 ATTCCTCACAGATGCGCTCCCAGTCATGCTCCTCGGCATGAATGCTAAGCTCATGTGCCA 29884 Query 46455 CTACATCGAGTTTGTAGCGGACCGACTGCTCGTGCAGCTTCACCAGCCGAAGCATTTTCA 46514 |||||||||||||| |||||||| ||| | || || | | |||| | | Sbjct 29885 GTACATCGAGTTTGTCGCGGACCGTCTGTTGTTGGCACTCGGGAATCAGAAGTTCTACAA 29944 Query 46515 CGCGCGCAATCCATTTGAGTTTATGAACAACATCTCCCTGGAGGGCAAAACTAATTTTTT 46574 ||| ||| ||||| || || ||| | ||||| || || | ||||| || || || || Sbjct 29945 CGCCACCAACCCATTCGATTTCATGGAGAACATTTCTCTAGGCGGCAAGACCAACTTCTT 30004 Query 46575 CGAAAAGCGCGTCGGCGAGTA 46595 ||| ||||| || || || || Sbjct 30005 CGAGAAGCGTGTTGGTGACTA 30025 >seq2223 Length=225719 Score = 89.7 bits (98), Expect = 5e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| || || || | || | ||| |||||||| || |||||||| || Sbjct 207996 CCACCACGCAGGCGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAG 207937 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||||| |||||||| || ||| |||| || |||||||||||||| || Sbjct 207936 AGAGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCCGGTGGA 207877 Query 131128 ATTCCTTCTTTGTC 131141 ||||| || ||||| Sbjct 207876 ATTCCCTCCTTGTC 207863 >seq224 Length=177688 Score = 89.7 bits (98), Expect = 5e-13 Identities = 130/184 (71%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 131042 ACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGT 131101 || ||||||| |||||||| || || ||||| ||||| | ||||| || ||| Sbjct 19038 ACACCTTTTGGATGTTGTAGTCAGACAAAGTGCGGCCATCCTCCAATTGCTTTCCAGCGA 19097 Query 131102 AGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCT 131161 |||| | ||||||||||||||| || ||||| || ||||| || || ||||| | Sbjct 19098 AGATCAGACGCTGCTGGTCCGGTGGAATTCCCTCCTTGTCCTGAATCTTGCTCTTGACAT 19157 Query 131162 GCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTA 131221 || | || |||| |||||||| || | ||| | ||| || || || || || || | Sbjct 19158 TATCGATGGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTGA 19217 Query 131222 CGAA 131225 |||| Sbjct 19218 CGAA 19221 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471993146567040