Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudocercospora_20musae_20[genbank_20GCA_5F001578225.1_202016-03- 01] 3,331 sequences; 60,439,160 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq2619 138 1e-27 >seq2619 Length=45072 Score = 138 bits (152), Expect = 1e-27 Identities = 547/853 (64%), Gaps = 16/853 (2%) Strand=Plus/Minus Query 32370 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT 32429 || ||||| ||||| ||||| || ||||| || || || || || ||| || || || Sbjct 30031 TTCTGGTAGTCACCAACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCTAGAGAAATGTTC 29972 Query 32430 TCCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 32489 ||||||||||||||||| ||||| | || || | || | | || | | | | | | Sbjct 29971 TCCATGAAATCGAATGGGTTGGTGGCGTTGTAGAACTTCTGATTCCCGAGTGCCAACAAC 29912 Query 32490 AATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 32549 | | || |||||||| || || || ||| | | | |||||| || | || Sbjct 29911 AGACGGTCCGCGACAAACTCGATGTACTGGCACATGAGCTTAGCATTCATGCCGAGGAGC 29852 Query 32550 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATA 32609 | ||||| || || | || || |||||||| ||||| | || || || || || Sbjct 29851 ATGACTGGGAGCGCATCTGTGAGGAATTCTTGCTCAATCGCAACAGCTTCAACGATGAT- 29793 Query 32610 GATCTT----ACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGC 32665 | ||| | || | | || | | | | | | | || |||| || ||||| Sbjct 29792 GCTCTGCACGAGTGATGCGTC--TGGCTTGTT-CTTGAGGTGAGAGAACAGCAGGCATGC 29736 Query 32666 GAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGG 32725 ||| || ||| | |||||||| | || ||||| || || || || || ||||| Sbjct 29735 GAAGTCTGTGTGCATGCCCTCGTCACGCGAGATCAATTCATTCGAGAATGTAAGACCGGG 29676 Query 32726 CATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCC 32785 ||| ||||||||||| || | ||| || ||||| || || || ||||| ||||| || || Sbjct 29675 CATGAGGCCACGCTTCTTCAACCAGAAGATGGATGCGAAAGAACCAGAGAAGAAGATGCC 29616 Query 32786 TTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCG---CTGTCATGTATCCA 32842 || || || || ||||| || | || || || | | ||||| ||||| Sbjct 29615 CTCGACGGCAGCGAAGGCGATCAATCGGCAGGCAAAAGTCGAGTTCTTGTCAGAGATCCA 29556 Query 32843 CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAG 32902 ||||| || |||||||| | ||| || || | || || || || ||||| Sbjct 29555 TCGCAATGCCCAGTCAGCCTTCTTACGGATACATGGGATGTTGTCGATGGCGTTGAAGAG 29496 Query 32903 ATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGA 32962 ||| | | || || | | || || || || | || || ||||||| Sbjct 29495 ATATGATCGCTGCTTGGGTTCGCTGATGTAGGTGTCGATAAGCAGGGAGTATGTTTCCGA 29436 Query 32963 ATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTAC 33022 || ||||| || || || || |||||||||||||||| || |||| |||||||| Sbjct 29435 GTGGATGTTCTCCATCATGATCTGGAATCCGTAGAAGCATCGTGCTTCGGGTATCTGTAC 29376 Query 33023 TTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAA 33082 ||| | || || || | | || ||||| || ||||||||| || || || || Sbjct 29375 TTCACCGCTGAAGCGCTCAACCAGGTTCTCATTGACAATTCCGTCAGATGCGGCGAAGAA 29316 Query 33083 CGCCAATACATGTTTTATAAAATATTTTTCGTC-TGGTGTTAGT---TTATTCCAATCAT 33138 || | |||||| || || ||| ||||| | || | ||| || ||||| || | Sbjct 29315 AGCAAGGACATGTGAGATGAAGTATCGCTCGTCATCGT-TCAGTCTCTTGTTCCAGTCGT 29257 Query 33139 TGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTAT 33198 | || || || | ||| | || || | ||||| || ||||| || ||||| || | Sbjct 29256 GAAGGTCCTTGGACAGATCAATCTCCTCAGCGGTCCAGAAGGATGCTTCGGCCTTCTTGT 29197 Query 33199 ACATATTCCAGAT 33211 |||| | ||| || Sbjct 29196 ACATCTGCCATAT 29184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633605617147600