Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudocercospora_20musae_20[genbank_20GCA_5F001578225.1_202016-03- 01] 3,331 sequences; 60,439,160 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq2619 187 3e-42 >seq2619 Length=45072 Score = 187 bits (206), Expect = 3e-42 Identities = 381/560 (68%), Gaps = 7/560 (1%) Strand=Plus/Minus Query 93091 GCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAA 93150 ||| || ||||| || || | || ||||| || || ||||| ||||| |||||| | Sbjct 29741 GCATGCGAAGTCTGTGTGCATGCCCTCGTCACGCGAGATCAATTCATTCGAGAATGTAAG 29682 Query 93151 ACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaa 93210 ||| || | || || || ||||| | ||| || || || || ||| |||||| || || Sbjct 29681 ACCGGGCATGAGGCCACGCTTCTTCAACCAGAAGATGGATGCGAAAGAACCAGAGAAGAA 29622 Query 93211 TATACCTTCCACGGCTGCAAATGCCA-CAATACGTTCGGCAAAATTTGCGGAATTACTGC 93269 || || || ||||| || || || | |||| || ||||||| | | | || Sbjct 29621 GATGCCCTCGACGGCAGCGAAGGCGATCAAT-CGGCAGGCAAAAGTCGAGTTCTTGTCAG 29563 Query 93270 TGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTT-TCGATAGCG 93328 ||||||| || ||||| || || || || ||||| || | |||| ||||| ||| Sbjct 29562 AGATCCATCGCAATGCCCAGTCAGCCTTCTTACGGATACATGGGA-TGTTGTCGATGGCG 29504 Query 93329 TTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATAC 93388 || || || || ||||| | | || | ||||| || ||||| | ||| || || Sbjct 29503 TTGAAGAGATATGATCGCTGCTTGGGTTCGCTGATGTAGGTGTCGATAAGCAGGGAGTAT 29444 Query 93389 ATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTG 93448 |||| || |||| |||||||| || |||||||||||||| |||| ||||| | Sbjct 29443 GTTTCCGAGTGGATGTTCTCCATCATGATCTGGAATCCGTAGAAGCATCGTGCTTCGGGT 29384 Query 93449 ATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCT 93508 ||||| ||||| || | ||| || || || |||||||| || || || ||||| Sbjct 29383 ATCTGTACTTCACCGCTGAAGCGCTCAACCAGGTTCTCATTGACAATTCCGTCAGATGCG 29324 Query 93509 GCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAG---CTTATCC 93565 || || ||||| | | ||| || || | | ||| ||||| || || ||| | | Sbjct 29323 GCGAAGAAAGCAAGGACATGTGAGATGAAGTATCGCTCGTCATCGTTCAGTCTCTTGTTC 29264 Query 93566 CAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCT 93625 || ||| || || || || ||||| | || || | ||||| || |||||||| || Sbjct 29263 CAGTCGTGAAGGTCCTTGGACAGATCAATCTCCTCAGCGGTCCAGAAGGATGCTTCGGCC 29204 Query 93626 TTTTTGTACATATCCCATAT 93645 || |||||||| | |||||| Sbjct 29203 TTCTTGTACATCTGCCATAT 29184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556837613708440