Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudocercospora_20musae_20[genbank_20GCA_5F001578225.1_202016-03- 01] 3,331 sequences; 60,439,160 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq1001 107 2e-18 seq224 98.7 8e-16 seq2223 84.2 2e-11 >seq1001 Length=158095 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 ||||| || || |||| || || || || || |||| || | ||| || | || Sbjct 25219 ACCGGCAAGACCATCACCCTCGAGGTTGAGTCCTCCGACACTATCGACAATGTGAAGAGC 25160 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || |||||||| || ||||| || ||||| || ||||| || || |||||||| Sbjct 25159 AAGATCCAGGACAAGGAAGGAATTCCTCCGGATCAGCAGCGTCTCATTTTCGCCGGCAAG 25100 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 || | |||||| |||||| |||| || ||||||||||| || || |||||| | || Sbjct 25099 CAACTCGAGGATGGCCGCACTCTCTCTGACTACAACATTCAGAAGGAGTCCACCCTCCAC 25040 Query 22423 TTAGTTTTGCGATTGCGCGGAGGT 22446 | || | || ||||||| ||| Sbjct 25039 CTTGTCCTCCGCCTGCGCGGTGGT 25016 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || | || || || || |||| || || || || | || Sbjct 25015 ATGCAAATCTTCGTCAAGACGCTCACTGGAAAGACTATCACCCTCGAGGTTGAGTCTTCC 24956 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| || |||| || || ||||||||||||||||||||||| || || Sbjct 24955 GACACTATTGACAATGTCAAGTCCAAGATCCAAGACAAGGAGGGTATTCCACCAGACCAG 24896 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || | || || || ||||| ||| | ||||| ||| ||| | ||||| |||||| Sbjct 24895 CAGCGCTTGATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGGACCTTGTCCGACTACAAC 24836 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || ||||| Sbjct 24835 ATCCAGAAGGAGTCCAC 24819 Score = 102 bits (112), Expect = 7e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || | ||||| || || |||| || ||||||||| | | Sbjct 24787 ATGCAAATCTTCGTCAAGACACTTACCGGCAAGACTATCACACTAGAAGTGGAATCTTCA 24728 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| || |||| || ||||||||||||||||| || ||||| || || Sbjct 24727 GACACCATCGACAATGTCAAGTCGAAGATTCAAGACAAGGAGGGCATCCCACCAGACCAG 24668 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || || ||||| ||| | ||||| ||| || | ||| |||||| Sbjct 24667 CAGCGCCTCATCTTCGCTGGCAAGCAGCTTGAGGACGGCCGGACATTGAGCGACTACAAC 24608 Query 22399 ATTCAAAAAGA 22409 || || || || Sbjct 24607 ATCCAGAAGGA 24597 >seq224 Length=177688 Score = 98.7 bits (108), Expect = 8e-16 Identities = 120/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 || || || || |||| ||||| || || || |||| ||| | || || |||| Sbjct 19206 ACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGACACCATCGATAATGTCAAGAGC 19147 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || ||||| ||||||||||| |||||||| || || || ||||| || || || || || Sbjct 19146 AAGATTCAGGACAAGGAGGGAATTCCACCGGACCAGCAGCGTCTGATCTTCGCTGGAAAG 19087 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAA 22406 || || |||||| |||||| | || || |||||||| ||||| Sbjct 19086 CAATTGGAGGATGGCCGCACTTTGTCTGACTACAACATCCAAAA 19043 >seq2223 Length=225719 Score = 84.2 bits (92), Expect = 2e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 22311 AGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGA 22370 |||||||||||| |||||||| || || || || | || || ||||| || ||| | || Sbjct 207862 AGACAAGGAGGGAATTCCACCGGACCAGCAGCGCTTGATCTTCGCCGGAAAGCAGCTCGA 207921 Query 22371 GGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACC 22416 |||| |||||| |||| || |||||||| || || || |||||| Sbjct 207922 GGATGGCCGCACTCTCTCGGACTACAACATCCAGAAGGAGTCCACC 207967 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419710960486015