Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudocercospora_20musae_20[genbank_20GCA_5F001578225.1_202016-03- 01] 3,331 sequences; 60,439,160 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq1113 87.8 4e-12 seq1779 86.0 1e-11 seq2626 84.2 4e-11 >seq1113 Length=209381 Score = 87.8 bits (96), Expect = 4e-12 Identities = 129/180 (72%), Gaps = 2/180 (1%) Strand=Plus/Minus Query 279378 GCATATGGTGGGAAGATTCTGCTAAACTCTACCCGCCTCAACATCAAGCGTGGCAACCGG 279437 || || |||| ||||||||||| |||||||| | ||| | ||||||||||| | || Sbjct 25127 GCGTACGGTGCTAAGATTCTGCTCAACTCTACACATCTCCGCCTCAAGCGTGGCCAGCGA 25068 Query 279438 TATGGTCTCATCGGTCCCAATGGAGCGGGTAAGAGCACTCTAATGCGCGCCATTGCAAAC 279497 || ||||| ||||||| || || | || |||| ||||| ||||| ||||| ||| Sbjct 25067 TACGGTCTGCTCGGTCCAAACGGTTCCGGAAAGACTACTCTCATGCGTGCCATCAACAAC 25008 Query 279498 GGTCAGCTGGAAGGATTTCCTAACGCA-TCTGAGGTAAGGACAGTGTATGTAGAGCACGA 279556 | ||| | | ||| |||| || ||| || || | ||| || || || |||||||| Sbjct 25007 GAGCAGGTCG-AGGGCTTCCCAAAGCAGAGCGAAGTCAAGACCGTCTACGTCGAGCACGA 24949 Score = 84.2 bits (92), Expect = 4e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 280702 CTCACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCAG 280761 ||||||| ||||| |||||||||||||| || ||| ||||| | || | | || Sbjct 23755 CTCACTCCCGCATGCGCGGTCTTTCTGGTGGTCAGCGTGTCAAGGTCGTGCTTGCTGCTT 23696 Query 280762 CTCTGTGGCAACACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGCG 280821 | ||||| | |||||| |||||||||| |||||||| |||||||| || ||||| | Sbjct 23695 GTTCATGGCAGCGTCCTCACTTGATCGTTCTTGACGAGCCAACCAACTACCTCGACCGTG 23636 Query 280822 A 280822 | Sbjct 23635 A 23635 >seq1779 Length=148467 Score = 86.0 bits (94), Expect = 1e-11 Identities = 166/241 (69%), Gaps = 8/241 (3%) Strand=Plus/Minus Query 293106 GTTCATGCTCTGCGTCTGATCGACAAAGGCACCACGATCAGCAGCGAGGTCAATCACTGT 293165 ||||| |||||| | |||||||| || ||||||||||| || || | | || | || Sbjct 98651 GTTCAAGCTCTGAGACTGATCGATGAACGCACCACGATCGGCGGCCATCTGAACGATAGT 98592 Query 293166 CTTCATAGAGATCTCCCACGATGTCTTGTACACTGCCTTGACAT----CAGGATGAATGC 293221 | | ||||||||| |||||||||| |||||||| | | ||||| || Sbjct 98591 TCGCTGACTGATCTCCCAGACAGTCTTGTACAATGCCTTGAGGTCGTCCGGGATGTTTG- 98533 Query 293222 CAATAACCTTCTGGATAGACCCTCCGTTGGCAATAATCTGGTTCTTCATTGTCTCGGACC 293281 ||| | | || ||||| || || | |||||| || |||||||||| ||||||||| Sbjct 98532 GAAT-GCGT--TGAATAGAGCCACCATCGGCAATGATGCGGTTCTTCATGTTCTCGGACC 98476 Query 293282 AAGTCCCACGAGCAATGAGCTCGCGGACAAGGTAAGAGTTGACAACGGGGAACTCACCAG 293341 | ||||| | | ||| || || || ||| |||||| || ||||||| |||| Sbjct 98475 AGAGACCACGGTCGACGAGGTCCTTGAGCAGCCAAGGGTTGACTACCTGGAACTCGCCAG 98416 Query 293342 C 293342 | Sbjct 98415 C 98415 >seq2626 Length=39097 Score = 84.2 bits (92), Expect = 4e-11 Identities = 145/208 (70%), Gaps = 6/208 (3%) Strand=Plus/Plus Query 279704 TCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGCCGA 279763 ||| || || || |||||||||||||| || || | | ||||| | ||||||| || Sbjct 31484 TCTTTCTGGAGGATGGAAGATGAAGCTTGCACTGGCCAGAGCCATGTTGATGCGTGCAGA 31543 Query 279764 TGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGGCTAGT 279823 ||| | || || || || || ||||||||| ||||| |||||| ||||| Sbjct 31544 AGTCTTCCTTCTCGACGAACCCACCAACCACTTGGACGTGGGCAACGTGAAATGGCTCCA 31603 Query 279824 GTCCTACCTAACCAGTCTGAAGA---ATGTTTCTTCCCTCATTGTCTCTCACGACTCTGG 279880 | |||||| | |||| | | | || | | || || ||||| |||||||||||||| Sbjct 31604 GGACTACCTTA--AGTC-GCATACCGATATCACCTCGCTGATTGTATCTCACGACTCTGG 31660 Query 279881 CTTCCTAGATGCCGTGTGCTCTGCCATC 279908 ||||| |||| || ||| | | |||| Sbjct 31661 ATTCCTGGATGAGGTCTGCACAGACATC 31688 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027792933531371