Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudocercospora_20musae_20[genbank_20GCA_5F001578225.1_202016-03- 01] 3,331 sequences; 60,439,160 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq1001 104 6e-17 seq224 102 2e-16 seq2619 86.0 1e-11 >seq1001 Length=158095 Score = 104 bits (114), Expect = 6e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | ||| || || || | ||| || || ||||| || ||||||| Sbjct 24789 CCACCACGGAGACGAAGGACAAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 24848 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || || ||||| || | || || || |||||||||| ||||| || ||| Sbjct 24849 AAGGTCCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCTGGTGGA 24908 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || || ||||| || | || || || || |||| ||| || || || Sbjct 24909 ATACCCTCCTTGTCTTGGATCTTGGACTTGACATTGTCAATAGTGTCGGAAGACTCAACC 24968 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||| ||||| || || || ||||||||||| || ||||| Sbjct 24969 TCGAGGGTGATAGTCTTTCCAGTGAGCGTCTTGACGAAGATTTGCAT 25015 Score = 100 bits (110), Expect = 7e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| || || | || || | || | ||||| || || ||||| || |||||| Sbjct 24560 TCCACCACGCAGACGGAGCACCAAGTGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCT 24619 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 | || || ||||| || | || || || |||||||| || ||||| || ||| Sbjct 24620 CAATGTCCGGCCGTCCTCAAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCTGGTGG 24679 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 ||| || || || || || || |||| || || || || || | || ||||| || Sbjct 24680 GATGCCCTCCTTGTCTTGAATCTTCGACTTGACATTGTCGATGGTGTCTGAAGATTCCAC 24739 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||| || ||||| ||||| ||||| || ||||||||||| || ||||| Sbjct 24740 TTCTAGTGTGATAGTCTTGCCGGTAAGTGTCTTGACGAAGATTTGCAT 24787 >seq224 Length=177688 Score = 102 bits (112), Expect = 2e-16 Identities = 132/180 (73%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345 |||||||| || ||||| | | ||||| || || || ||||| ||||| ||||||||| Sbjct 19043 TTTTGGATGTTGTAGTCAGACAAAGTGCGGCCATCCTCCAATTGCTTTCCAGCGAAGATC 19102 Query 288346 AGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT-TTCACGTTTTC 288404 |||||||| || ||| ||||| || || ||||| || || ||| || || || || Sbjct 19103 AGACGCTGCTGGTCCGGTGGAATTCCCTCCTTGTCCTGAATCTT-GCTCTTGACATTATC 19161 Query 288405 TATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAA 288464 || | ||| || || || || || ||||| ||||| || || || ||||||||||| Sbjct 19162 GATGGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAA 19221 >seq2619 Length=45072 Score = 86.0 bits (94), Expect = 1e-11 Identities = 134/189 (71%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 269153 TCGGTATGAATGCCGATCTCATGAATCAATATATCGAATTCGTGGCTGATCGTATCTTCA 269212 |||| |||||||| | |||||| || || ||||| || || || || ||| | || Sbjct 29857 TCGGCATGAATGCTAAGCTCATGTGCCAGTACATCGAGTTTGTCGCGGACCGTCTGTTGT 29916 Query 269213 CGGCACTCGGTTATGAGAAAGTGTACAATTCGAAGAATCCCTTCGCCTTTATGGAACTAA 269272 ||||||||| || |||| | ||||| | | || || |||| || ||||| | Sbjct 29917 TGGCACTCGGGAATCAGAAGTTCTACAACGCCACCAACCCATTCGATTTCATGGAGAACA 29976 Query 269273 TTTCGCTCGAAGGAAAGACGAACTTCTTCGAAAAGCGTGTCAGCGACTATCA-ACGTCCT 269331 |||| || | || ||||| ||||||||||| |||||||| | ||||| || | | || Sbjct 29977 TTTCTCTAGGCGGCAAGACCAACTTCTTCGAGAAGCGTGTTGGTGACTACCAGAAGGCC- 30035 Query 269332 GGTGTAATG 269340 ||||| ||| Sbjct 30036 GGTGTCATG 30044 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179604054193418