Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudocercospora_20musae_20[genbank_20GCA_5F001578225.1_202016-03- 01] 3,331 sequences; 60,439,160 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq1001 132 5e-26 seq224 98.7 1e-15 >seq1001 Length=158095 Score = 132 bits (146), Expect = 5e-26 Identities = 161/217 (74%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||| | |||||| |||| ||||||||||| || || ||||| || || ||||| | Sbjct 24572 ACGGAGCACCAAGTGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAATGTCCGGCC 24631 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 ||| || |||||||| |||||||| ||||| ||||||||||| | ||| | || |||||| Sbjct 24632 GTCCTCAAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCTGGTGGGATGCCCTCCTT 24691 Query 42113 GTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGA 42171 || | ||| | || | |||| | | | ||||| |||||||| || | |||| Sbjct 24692 GT-CTTGAATCTTCGACTTGACATTGTCGATGGTGTCTGAAGATTCCACTTCTAGTGTGA 24750 Query 42172 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || ||||| || || ||||| || ||||||||||| Sbjct 24751 TAGTCTTGCCGGTAAGTGTCTTGACGAAGATTTGCAT 24787 Score = 104 bits (114), Expect = 3e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| || | || ||||| |||| || |||||||| |||||||| Sbjct 24824 CTCCTTCTGGATGTTGTAGTCGGACAAGGTCCGGCCGTCCTCGAGCTGCTTGCCAGCGAA 24883 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || | ||||||||||| | ||| | | ||||||||| ||| || |||| | Sbjct 24884 GATCAAGCGCTGCTGGTCTGGTGGAATACCCTCCTTGTCTTGGATCTTGGACTTGACATT 24943 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | |||||| || || || |||| ||||| || || || || |||||||| || Sbjct 24944 GTCAATAGTGTCGGAAGACTCAACCTCGAGGGTGATAGTCTTTCCAGTGAGCGTCTTGAC 25003 Query 42197 AAAGATTTGCAT 42208 ||||||||||| Sbjct 25004 GAAGATTTGCAT 25015 >seq224 Length=177688 Score = 98.7 bits (108), Expect = 1e-15 Identities = 138/191 (72%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 42011 TGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACC 42070 ||||| | ||||||| || ||||| |||| || ||| || | || || | ||||| || Sbjct 19033 TGTGCACACCTTTTGGATGTTGTAGTCAGACAAAGTGCGGCCATCCTCCAATTGCTTTCC 19092 Query 42071 AGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGT-T 42129 |||||| || || ||||||||||| | ||| | | |||||||||| ||| | || | | Sbjct 19093 AGCGAAGATCAGACGCTGCTGGTCCGGTGGAATTCCCTCCTTGTCC-TGAATCTTGCTCT 19151 Query 42130 TGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCG 42189 ||| | | | |||||| || || || || | |||||||| |||||||| || | Sbjct 19152 TGACATTATCGATGGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTGAGGG 19211 Query 42190 TCTTTACAAAG 42200 |||| || ||| Sbjct 19212 TCTTGACGAAG 19222 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543190181977040