Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudocercospora_20musae_20[genbank_20GCA_5F001578225.1_202016-03- 01] 3,331 sequences; 60,439,160 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq2619 161 1e-34 seq1001 89.7 5e-13 >seq2619 Length=45072 Score = 161 bits (178), Expect = 1e-34 Identities = 528/805 (66%), Gaps = 13/805 (2%) Strand=Plus/Plus Query 52038 GAGGAGGTTGATATGTCGAGGGACTATGACGACTTTGAGTCTAAATTAAACGATGACGAG 52097 |||||| ||||| |||| | |||| | |||||| | | | | |||||||||||| Sbjct 29229 GAGGAGATTGATCTGTCCAAGGACCTTCACGACTGGAACAAGAGACTGAACGATGACGAG 29288 Query 52098 CGCTATTTTATCAAGCACGTGTTGGCGTTCTTCGCCGCCGCCGATAGCATCGTGAACATT 52157 || || || ||| || || | || ||||||||||| | || | || || || Sbjct 29289 CGATACTTCATCTCACATGTCCTTGCTTTCTTCGCCGCATCTGACGGAATTGTCAATGAG 29348 Query 52158 AACCTCATCGAGTACATGCAGCGGA-ACGTTCCGGAACTCGAGGCGCAATACTTTTATAA 52216 ||||| | ||| | | |||||| | || | | || ||| || | || ||| || Sbjct 29349 AACCTGGTTGAGCGCTT-CAGCGGTGAAGTACAGATACCCGAAGCACGATGCTTCTACGG 29407 Query 52217 TTTGCAAGTGCTCATCGAGTGCGTGCACACGGAGATGTACAATCTGCTCATTGAGCAGCT 52276 || || | | || ||| | | ||| |||| | ||| ||||| || || || || Sbjct 29408 ATTCCAGATCATGATGGAGAACATCCACTCGGAAACATACTCCCTGCTTATCGA-CACCT 29466 Query 52277 GATAAAAGATGAGCACGAGC-GCGA-CACG-CTGCTGAATGCGTTCGAGCACGTGCCGTG 52333 | | || || | | ||| |||| || || | || || |||| || | || || Sbjct 29467 -ACATCAGC-GAACCCAAGCAGCGATCATATCTCTTCAACGCCATCGACAACATCCCATG 29524 Query 52334 CGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACCGCCACGCTGGC 52393 | || || |||||| | |||||| || |||||| | | | | | || | || Sbjct 29525 TATCCGTAAGAAGGCTGACTGGGCATTGCGATGGATCTCTGACAAGAACTCGACTTTTGC 29584 Query 52394 CGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCCGC 52453 | || || | |||||||| ||||||||| | || || || || || || | Sbjct 29585 CTGCCGATTGATCGCCTTCGCTGCCGTCGAGGGCATCTTCTTCTCTGGTTCTTTCGCATC 29644 Query 52454 CATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTGAT 52513 |||||| | | || | | ||| | |||||||| || || ||| || || ||||| Sbjct 29645 CATCTTCTGGTTGAAGAAGCGTGGCCTCATGCCCGGTCTTACATTCTCGAATGAATTGAT 29704 Query 52514 ATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCT-CTACTACAAGACGCGCGTGA 52572 ||||| ||||| || ||||||| ||||| || ||||| || | || | | || Sbjct 29705 CTCGCGTGACGAGGGCATGCACACAGACTTCGCATGCCTGCTGTTCTCTCAC-CTCAAGA 29763 Query 52573 CCGAAAAATTGGATTCGGACACGATCCTGAGCATGTTCAAGGAGGCGGTGGCTATCGAAA 52632 | | | | || || || | | |||||| || || || || || || || Sbjct 29764 ACAAGCCAGACGCATC--ACTCG-TGCAGAGCATCATCGTTGAAGCTGTTGCGATTGAGC 29820 Query 52633 AGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGTCCATGT 52692 | || || | || | ||||| || ||| ||| || |||||||| || || ||||| Sbjct 29821 AAGAATTCCTCACAGATGCGCTCCCAGTCATGCTCCTCGGCATGAATGCTAAGCTCATGT 29880 Query 52693 GCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGCAGCCAAAGTACT 52752 || |||||||||||||||| ||||| ||||||||| || |||||| | | |||| || Sbjct 29881 GCCAGTACATCGAGTTTGTCGCGGACCGTCTGTTGTTGGCACTCGGGAATCAGAAGTTCT 29940 Query 52753 TCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACCAACT 52812 |||||| ||| || || || || ||| | |||||||| || | ||||||||||||| Sbjct 29941 ACAACGCCACCAACCCATTCGATTTCATGGAGAACATTTCTCTAGGCGGCAAGACCAACT 30000 Query 52813 TTTTCGAGAAGCGAGTCGGCGAGTA 52837 | ||||||||||| || || || || Sbjct 30001 TCTTCGAGAAGCGTGTTGGTGACTA 30025 >seq1001 Length=158095 Score = 89.7 bits (98), Expect = 5e-13 Identities = 125/173 (72%), Gaps = 2/173 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| |||||||||||||| | ||| || ||||||||||| || |||| Sbjct 25050 GACTCCTTCTGAATGTTGTAGTCAGAGAGAGTGCGGCCATCCTCGAGTTGCTTGCCGGCG 25109 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGAT-TTTTTGTTTTAA 138539 | || |||||||| || |||||||| || ||||| ||||| ||| || | || | Sbjct 25110 AAAATGAGACGCTGCTGATCCGGAGGAATTCCTTCCTTGTCCTGGATCTTGCTCTTCACA 25169 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCA 138592 ||| || | ||||||| ||||| ||||||| || | || || || |||| Sbjct 25170 TTG-TCGATAGTGTCGGAGGACTCAACCTCGAGGGTGATGGTCTTGCCGGTCA 25221 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| || || || ||||||||| || || || | Sbjct 24822 GACTCCTTCTGGATGTTGTAGTCGGACAAGGTCCGGCCGTCCTCGAGCTGCTTGCCAGCG 24881 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||| | ||||| ||||| || || ||||| || ||||| ||| || || | | Sbjct 24882 AAGATCAAGCGCTGCTGGTCTGGTGGAATACCCTCCTTGTCTTGGATCTTGGACTTGACA 24941 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | ||||||| ||||| ||||||| || | || || ||||| || || || Sbjct 24942 TTG-TCAATAGTGTCGGAAGACTCAACCTCGAGGGTGATAGTCTTTCCAGTGAGCGTCTT 25000 Query 138600 TACAAAAATCTGCAT 138614 || || || ||||| Sbjct 25001 GACGAAGATTTGCAT 25015 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496241736874320