Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudocercospora_20musae_20[genbank_20GCA_5F001578225.1_202016-03- 01] 3,331 sequences; 60,439,160 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq2619 107 2e-18 seq1001 96.9 3e-15 >seq2619 Length=45072 Score = 107 bits (118), Expect = 2e-18 Identities = 300/450 (67%), Gaps = 23/450 (5%) Strand=Plus/Plus Query 47139 CGTTTGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTTTGCGGCGATA 47198 || |||||||| ||||| |||||||||| |||||||||| || || || | || Sbjct 29589 CGATTGATCGCCTTCGCTGCCGTCGAGGGCATCTTCTTCTCTGGTTCTTTCGCATCCATC 29648 Query 47199 TTTTACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCG 47258 || | |||| | || | |||||||| || || || || || | |||||| Sbjct 29649 TTCTGGTTGAAGAAGCGTGGCCTCATGCCCGGTCTTACATTCTCGAATGAATTGATCTCG 29708 Query 47259 AGAGACGAAGGCCTGCACACCAACTT----TGCCTGTCTCTACTA-CAACACTAGAGTCG 47313 | ||||| ||| ||||||| |||| |||||| || | || || | | ||| Sbjct 29709 CGTGACGAGGGCATGCACACAGACTTCGCATGCCTG-CTGTTCTCTCACCTCAAGA---- 29763 Query 47314 ATCAAAAGTTGGACGTGCCCACCGT-CAGCGACATGTTTGCCGAAGCCGTCGCCATTGAG 47372 | ||| |||| | ||| ||| | ||| | | ||||| || || |||||| Sbjct 29764 ---ACAAGCCAGACGCATCACTCGTGCAGAG-CATCATCGTTGAAGCTGTTGCGATTGAG 29819 Query 47373 ATGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTT--TAGTGGGAATGAACGCGGAGATGA 47430 || || || | || || || || | || | | | || ||||| || || | | Sbjct 29820 CAAGAATTCCTCACAGATGCGCTCCCAG--TCATGCTCCTCGGCATGAATGCTAAGCTCA 29877 Query 47431 TGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTT--CAGCTAAAGTATCCCAA 47488 || | |||||||||| |||||||| ||||| ||| | ||| || || | ||| || Sbjct 29878 TGTGCCAGTACATCGAGTTTGTCGCGGACCGTCTGTT-GTTGGCA-CTCGGGAATCAGAA 29935 Query 47489 GATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGAC 47548 | | ||| || || || |||||||| || ||| | |||||||| || | |||||||| Sbjct 29936 GTTCTACAACGCCACCAACCCATTCGATTTCATGGAGAACATTTCTCTAGGCGGCAAGAC 29995 Query 47549 CAACTTTTTCGAGAAGCGCGTCGGCGAATA 47578 |||||| ||||||||||| || || || || Sbjct 29996 CAACTTCTTCGAGAAGCGTGTTGGTGACTA 30025 >seq1001 Length=158095 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| || | || | |||||| || | || ||| || || || ||||| |||| Sbjct 24560 TCCACCACGCAGACGGAGCACCAAGTGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCT 24619 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 || || || || || ||||| || |||||| |||| | |||||||| || || || Sbjct 24620 CAATGTCCGGCCGTCCTCAAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCTGGTGG 24679 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 |||||||||||||| || ||| ||||| | |||| |||||| | | || || Sbjct 24680 GATGCCCTCCTTGTCTTGAATCTTCGACTTGACATTGTCGATGGTGTCTGAAGATTCCAC 24739 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| | || | || |||||||| || || || || || || ||||| Sbjct 24740 TTCTAGTGTGATAGTCTTGCCGGTAAGTGTCTTGACGAAGATTTGCAT 24787 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| ||| || || || || || ||||| || ||| Sbjct 24819 GTGGACTCCTTCTGGATGTTGTAGTCGGACAAGGTCCGGCCGTCCTCGAGCTGCTTGCCA 24878 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| ||||||| |||||||| || || || || ||||||||||| ||| || |||| Sbjct 24879 GCGAAGATCAAGCGCTGCTGGTCTGGTGGAATACCCTCCTTGTCTTGGATCTTGGACTTG 24938 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | || | ||||| | | ||| || |||| ||| | || || || || || || Sbjct 24939 ACATTGTCAATAGTGTCGGAAGACTCAACCTCGAGGGTGATAGTCTTTCCAGTGAGCGTC 24998 Query 127097 TTTACAAAAATCTGCAT 127113 || || || || ||||| Sbjct 24999 TTGACGAAGATTTGCAT 25015 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475481001335440