Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudocercospora_20musae_20[genbank_20GCA_5F001578225.1_202016-03-
01] 3,331 sequences; 60,439,160 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq2619 107 2e-18
seq1001 96.9 3e-15
>seq2619
Length=45072
Score = 107 bits (118), Expect = 2e-18
Identities = 300/450 (67%), Gaps = 23/450 (5%)
Strand=Plus/Plus
Query 47139 CGTTTGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTTTGCGGCGATA 47198
|| |||||||| ||||| |||||||||| |||||||||| || || || | ||
Sbjct 29589 CGATTGATCGCCTTCGCTGCCGTCGAGGGCATCTTCTTCTCTGGTTCTTTCGCATCCATC 29648
Query 47199 TTTTACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCG 47258
|| | |||| | || | |||||||| || || || || || | ||||||
Sbjct 29649 TTCTGGTTGAAGAAGCGTGGCCTCATGCCCGGTCTTACATTCTCGAATGAATTGATCTCG 29708
Query 47259 AGAGACGAAGGCCTGCACACCAACTT----TGCCTGTCTCTACTA-CAACACTAGAGTCG 47313
| ||||| ||| ||||||| |||| |||||| || | || || | | |||
Sbjct 29709 CGTGACGAGGGCATGCACACAGACTTCGCATGCCTG-CTGTTCTCTCACCTCAAGA---- 29763
Query 47314 ATCAAAAGTTGGACGTGCCCACCGT-CAGCGACATGTTTGCCGAAGCCGTCGCCATTGAG 47372
| ||| |||| | ||| ||| | ||| | | ||||| || || ||||||
Sbjct 29764 ---ACAAGCCAGACGCATCACTCGTGCAGAG-CATCATCGTTGAAGCTGTTGCGATTGAG 29819
Query 47373 ATGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTT--TAGTGGGAATGAACGCGGAGATGA 47430
|| || || | || || || || | || | | | || ||||| || || | |
Sbjct 29820 CAAGAATTCCTCACAGATGCGCTCCCAG--TCATGCTCCTCGGCATGAATGCTAAGCTCA 29877
Query 47431 TGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTT--CAGCTAAAGTATCCCAA 47488
|| | |||||||||| |||||||| ||||| ||| | ||| || || | ||| ||
Sbjct 29878 TGTGCCAGTACATCGAGTTTGTCGCGGACCGTCTGTT-GTTGGCA-CTCGGGAATCAGAA 29935
Query 47489 GATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGAC 47548
| | ||| || || || |||||||| || ||| | |||||||| || | ||||||||
Sbjct 29936 GTTCTACAACGCCACCAACCCATTCGATTTCATGGAGAACATTTCTCTAGGCGGCAAGAC 29995
Query 47549 CAACTTTTTCGAGAAGCGCGTCGGCGAATA 47578
|||||| ||||||||||| || || || ||
Sbjct 29996 CAACTTCTTCGAGAAGCGTGTTGGTGACTA 30025
>seq1001
Length=158095
Score = 96.9 bits (106), Expect = 3e-15
Identities = 158/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945
|||||| || | || | |||||| || | || ||| || || || ||||| ||||
Sbjct 24560 TCCACCACGCAGACGGAGCACCAAGTGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCT 24619
Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005
|| || || || || ||||| || |||||| |||| | |||||||| || || ||
Sbjct 24620 CAATGTCCGGCCGTCCTCAAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCTGGTGG 24679
Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065
|||||||||||||| || ||| ||||| | |||| |||||| | | || ||
Sbjct 24680 GATGCCCTCCTTGTCTTGAATCTTCGACTTGACATTGTCGATGGTGTCTGAAGATTCCAC 24739
Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
||| | || | || |||||||| || || || || || || |||||
Sbjct 24740 TTCTAGTGTGATAGTCTTGCCGGTAAGTGTCTTGACGAAGATTTGCAT 24787
Score = 86.0 bits (94), Expect = 6e-12
Identities = 137/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|| ||||| || || || ||||| ||| || || || || || ||||| || |||
Sbjct 24819 GTGGACTCCTTCTGGATGTTGTAGTCGGACAAGGTCCGGCCGTCCTCGAGCTGCTTGCCA 24878
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
||| ||||||| |||||||| || || || || ||||||||||| ||| || ||||
Sbjct 24879 GCGAAGATCAAGCGCTGCTGGTCTGGTGGAATACCCTCCTTGTCTTGGATCTTGGACTTG 24938
Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096
| | || | ||||| | | ||| || |||| ||| | || || || || || ||
Sbjct 24939 ACATTGTCAATAGTGTCGGAAGACTCAACCTCGAGGGTGATAGTCTTTCCAGTGAGCGTC 24998
Query 127097 TTTACAAAAATCTGCAT 127113
|| || || || |||||
Sbjct 24999 TTGACGAAGATTTGCAT 25015
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475481001335440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |