Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudocercospora_20musae_20[genbank_20GCA_5F001578225.1_202016-03- 01] 3,331 sequences; 60,439,160 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq224 134 3e-26 seq1001 132 1e-25 seq2223 109 1e-18 >seq224 Length=177688 Score = 134 bits (148), Expect = 3e-26 Identities = 140/184 (76%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 199437 ACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGA 199496 || ||||||||| ||||||||||| |||||| | ||||| |||| |||||||| |||| Sbjct 19038 ACACCTTTTGGATGTTGTAGTCAGACAAAGTGCGGCCATCCTCCAATTGCTTTCCAGCGA 19097 Query 199497 AGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGG 199556 |||| ||||||||||||||||| |||||| || ||||||||||| ||| || Sbjct 19098 AGATCAGACGCTGCTGGTCCGGTGGAATTCCCTCCTTGTCCTGAATCTTGCTCTTGACAT 19157 Query 199557 ATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCA 199616 |||| |||||| | | || || || | ||||| ||||| |||||||| || || | Sbjct 19158 TATCGATGGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTGA 19217 Query 199617 CAAA 199620 | || Sbjct 19218 CGAA 19221 >seq1001 Length=158095 Score = 132 bits (146), Expect = 1e-25 Identities = 142/188 (76%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 |||||||||||||| || |||||||| || | ||||||||||| | ||| | ||||| Sbjct 25032 AGGACAAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCAGAGAGAGTGCGGCCATCC 25091 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || || ||||| |||||||| |||||||||||||| |||||| ||||||||| ||| Sbjct 25092 TCGAGTTGCTTGCCGGCGAAAATGAGACGCTGCTGATCCGGAGGAATTCCTTCCTTGTCC 25151 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| |||||| |||| ||||| | | || || || | ||||| ||| Sbjct 25152 TGGATCTTGCTCTTCACATTGTCGATAGTGTCGGAGGACTCAACCTCGAGGGTGATGGTC 25211 Query 199598 TTACCCGT 199605 || || || Sbjct 25212 TTGCCGGT 25219 Score = 120 bits (132), Expect = 7e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||||||||||||||| |||||||| |||| ||||||||| | ||| |||| || || Sbjct 24804 AGGACAAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAAGGTCCGGCCGTCC 24863 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| || |||||||| | ||||||||||| || ||| || || || Sbjct 24864 TCGAGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCTGGTGGAATACCCTCCTTGTCT 24923 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| || || | ||||| | | || || || | ||||| ||| Sbjct 24924 TGGATCTTGGACTTGACATTGTCAATAGTGTCGGAAGACTCAACCTCGAGGGTGATAGTC 24983 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || || || || ||||| Sbjct 24984 TTTCCAGTGAGCGTCTTGACGAAGATTTG 25012 Score = 111 bits (122), Expect = 4e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||| ||||| |||||| |||| ||||||||| ||| |||| || || Sbjct 24576 AGCACCAAGTGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAATGTCCGGCCGTCC 24635 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| || ||||||||||| ||||||||||| || || || || || Sbjct 24636 TCAAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCTGGTGGGATGCCCTCCTTGTCT 24695 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| ||| || |||| |||||||| | ||| || || | ||||| ||| Sbjct 24696 TGAATCTTCGACTTGACATTGTCGATGGTGTCTGAAGATTCCACTTCTAGTGTGATAGTC 24755 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || || || || ||||| Sbjct 24756 TTGCCGGTAAGTGTCTTGACGAAGATTTG 24784 >seq2223 Length=225719 Score = 109 bits (120), Expect = 1e-18 Identities = 92/113 (81%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| |||||||| || |||||||| |||| ||||||||| | | ||| | ||||| Sbjct 207981 AGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAGAGAGTGCGGCCATCC 207922 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTC 199530 || |||||||||||||||||||| | |||||||||||||| |||||| || Sbjct 207921 TCGAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCCGGTGGAATTCCCTC 207869 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178871285468177