Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudocercospora_20musae_20[genbank_20GCA_5F001578225.1_202016-03-
01] 3,331 sequences; 60,439,160 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq1001 125 8e-24
seq2223 102 9e-17
seq224 100 3e-16
>seq1001
Length=158095
Score = 125 bits (138), Expect = 8e-24
Identities = 143/192 (74%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| ||||||||||| | || || |||| |||||||||||||| |||||
Sbjct 24824 CTCCTTCTGGATGTTGTAGTCGGACAAGGTCCGGCCGTCCTCGAGCTGCTTGCCAGCGAA 24883
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
||||||||||||||||| | || | | ||||||||| |||||| ||||| |
Sbjct 24884 GATCAAGCGCTGCTGGTCTGGTGGAATACCCTCCTTGTCTTGGATCTTGGACTTGACATT 24943
Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581
| | |||||| || || || || | ||||| || || || || ||||| || ||
Sbjct 24944 GTCAATAGTGTCGGAAGACTCAACCTCGAGGGTGATAGTCTTTCCAGTGAGCGTCTTGAC 25003
Query 46582 AAAGATTTGCAT 46593
|||||||||||
Sbjct 25004 GAAGATTTGCAT 25015
Score = 123 bits (136), Expect = 3e-23
Identities = 157/216 (73%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437
||| | ||||| |||| || |||||||| ||||| ||||||||| | || || |
Sbjct 24572 ACGGAGCACCAAGTGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAATGTCCGGCC 24631
Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497
||| || ||||||||||| ||||| || | |||||||||||| | || | || ||||||
Sbjct 24632 GTCCTCAAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCTGGTGGGATGCCCTCCTT 24691
Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557
||| |||||| ||||| | | | ||||| |||||||| || | |||||
Sbjct 24692 GTCTTGAATCTTCGACTTGACATTGTCGATGGTGTCTGAAGATTCCACTTCTAGTGTGAT 24751
Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|| ||||| || || || || || |||||||||||
Sbjct 24752 AGTCTTGCCGGTAAGTGTCTTGACGAAGATTTGCAT 24787
Score = 95.1 bits (104), Expect = 1e-14
Identities = 123/170 (72%), Gaps = 0/170 (0%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| || || |||||||| || |||||||| | || ||||| ||||||||||||||
Sbjct 25052 CTCCTTCTGAATGTTGTAGTCAGAGAGAGTGCGGCCATCCTCGAGTTGCTTGCCGGCGAA 25111
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|| | |||||||| || | || | | ||||||||| |||||| |||| | |
Sbjct 25112 AATGAGACGCTGCTGATCCGGAGGAATTCCTTCCTTGTCCTGGATCTTGCTCTTCACATT 25171
Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCA 46571
| | |||||| || || || || | |||||||| ||||| ||||
Sbjct 25172 GTCGATAGTGTCGGAGGACTCAACCTCGAGGGTGATGGTCTTGCCGGTCA 25221
>seq2223
Length=225719
Score = 102 bits (112), Expect = 9e-17
Identities = 82/99 (83%), Gaps = 0/99 (0%)
Strand=Plus/Minus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| |||||||| || |||||||| | || ||||||||||| ||||||||
Sbjct 207961 CTCCTTCTGGATGTTGTAGTCCGAGAGAGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAA 207902
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 46500
||||||||||||||||| | || | | |||||||||
Sbjct 207901 GATCAAGCGCTGCTGGTCCGGTGGAATTCCCTCCTTGTC 207863
>seq224
Length=177688
Score = 100 bits (110), Expect = 3e-16
Identities = 136/190 (72%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 46396 TGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCC 46455
||| | | |||||||||| |||||||| || | |||||| | || || | ||||| ||
Sbjct 19033 TGTGCACACCTTTTGGATGTTGTAGTCAGACAAAGTGCGGCCATCCTCCAATTGCTTTCC 19092
Query 46456 GGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTT 46515
||||| |||| ||||||||||| | || | | |||||||||| ||||| ||||
Sbjct 19093 AGCGAAGATCAGACGCTGCTGGTCCGGTGGAATTCCCTCCTTGTCCTGAATCTTGCTCTT 19152
Query 46516 GAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGT 46575
|| | | | |||||| || || || || | |||||||| |||||||| || ||
Sbjct 19153 GACATTATCGATGGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTGAGGGT 19212
Query 46576 TTTAACAAAG 46585
|| || |||
Sbjct 19213 CTTGACGAAG 19222
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 565214864886120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |