Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudocercospora_20musae_20[genbank_20GCA_5F001578225.1_202016-03- 01] 3,331 sequences; 60,439,160 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq1001 125 8e-24 seq2223 102 9e-17 seq224 100 3e-16 >seq1001 Length=158095 Score = 125 bits (138), Expect = 8e-24 Identities = 143/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||||| | || || |||| |||||||||||||| ||||| Sbjct 24824 CTCCTTCTGGATGTTGTAGTCGGACAAGGTCCGGCCGTCCTCGAGCTGCTTGCCAGCGAA 24883 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||||||||||||||| | || | | ||||||||| |||||| ||||| | Sbjct 24884 GATCAAGCGCTGCTGGTCTGGTGGAATACCCTCCTTGTCTTGGATCTTGGACTTGACATT 24943 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | |||||| || || || || | ||||| || || || || ||||| || || Sbjct 24944 GTCAATAGTGTCGGAAGACTCAACCTCGAGGGTGATAGTCTTTCCAGTGAGCGTCTTGAC 25003 Query 46582 AAAGATTTGCAT 46593 ||||||||||| Sbjct 25004 GAAGATTTGCAT 25015 Score = 123 bits (136), Expect = 3e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||| | ||||| |||| || |||||||| ||||| ||||||||| | || || | Sbjct 24572 ACGGAGCACCAAGTGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAATGTCCGGCC 24631 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 ||| || ||||||||||| ||||| || | |||||||||||| | || | || |||||| Sbjct 24632 GTCCTCAAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCTGGTGGGATGCCCTCCTT 24691 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 ||| |||||| ||||| | | | ||||| |||||||| || | ||||| Sbjct 24692 GTCTTGAATCTTCGACTTGACATTGTCGATGGTGTCTGAAGATTCCACTTCTAGTGTGAT 24751 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || ||||| || || || || || ||||||||||| Sbjct 24752 AGTCTTGCCGGTAAGTGTCTTGACGAAGATTTGCAT 24787 Score = 95.1 bits (104), Expect = 1e-14 Identities = 123/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| || || |||||||| || |||||||| | || ||||| |||||||||||||| Sbjct 25052 CTCCTTCTGAATGTTGTAGTCAGAGAGAGTGCGGCCATCCTCGAGTTGCTTGCCGGCGAA 25111 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | |||||||| || | || | | ||||||||| |||||| |||| | | Sbjct 25112 AATGAGACGCTGCTGATCCGGAGGAATTCCTTCCTTGTCCTGGATCTTGCTCTTCACATT 25171 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCA 46571 | | |||||| || || || || | |||||||| ||||| |||| Sbjct 25172 GTCGATAGTGTCGGAGGACTCAACCTCGAGGGTGATGGTCTTGCCGGTCA 25221 >seq2223 Length=225719 Score = 102 bits (112), Expect = 9e-17 Identities = 82/99 (83%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| || |||||||| | || ||||||||||| |||||||| Sbjct 207961 CTCCTTCTGGATGTTGTAGTCCGAGAGAGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAA 207902 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 46500 ||||||||||||||||| | || | | ||||||||| Sbjct 207901 GATCAAGCGCTGCTGGTCCGGTGGAATTCCCTCCTTGTC 207863 >seq224 Length=177688 Score = 100 bits (110), Expect = 3e-16 Identities = 136/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 46396 TGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCC 46455 ||| | | |||||||||| |||||||| || | |||||| | || || | ||||| || Sbjct 19033 TGTGCACACCTTTTGGATGTTGTAGTCAGACAAAGTGCGGCCATCCTCCAATTGCTTTCC 19092 Query 46456 GGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTT 46515 ||||| |||| ||||||||||| | || | | |||||||||| ||||| |||| Sbjct 19093 AGCGAAGATCAGACGCTGCTGGTCCGGTGGAATTCCCTCCTTGTCCTGAATCTTGCTCTT 19152 Query 46516 GAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGT 46575 || | | | |||||| || || || || | |||||||| |||||||| || || Sbjct 19153 GACATTATCGATGGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTGAGGGT 19212 Query 46576 TTTAACAAAG 46585 || || ||| Sbjct 19213 CTTGACGAAG 19222 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565214864886120