Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudocercospora_20musae_20[genbank_20GCA_5F001578225.1_202016-03- 01] 3,331 sequences; 60,439,160 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq1001 147 5e-30 seq2223 89.7 1e-12 >seq1001 Length=158095 Score = 147 bits (162), Expect = 5e-30 Identities = 160/210 (76%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTC 194990 |||||||| ||||||||||| || || || ||||| |||| |||| || | || || || Sbjct 24807 ACAAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAAG-GTCCGGCCGTCCTC 24865 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 ||||||||| || |||||||| | || || |||||||| ||||| || || |||||||| Sbjct 24866 GAGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCTGGTGGAATACCCTCCTTGTCTTG 24925 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 || || |||||| || ||||| ||||| ||| || || || ||||| | ||||| Sbjct 24926 GATCTTGGACTTGACATTGTCAATAGTGTCGGAAGACTCAACCTCGAGGGTGATAGTCTT 24985 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| || | || || ||||| | |||||| Sbjct 24986 TCCAGTGAGCGTCTTGACGAAGATTTGCAT 25015 Score = 129 bits (142), Expect = 1e-24 Identities = 151/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| |||||| ||| || || || ||||| ||| | || | || || || ||||| Sbjct 24584 GTGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAATGTCCGGCCGTCCTCAAGCTG 24643 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || |||||||| || || || |||||||| || ||||| || ||||||||||| || Sbjct 24644 CTTGCCAGCGAAGATGAGGCGCTGCTGGTCTGGTGGGATGCCCTCCTTGTCTTGAATCTT 24703 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 |||||| || || |||||||| ||| ||||||||| || || | ||||| || || Sbjct 24704 CGACTTGACATTGTCGATGGTGTCTGAAGATTCCACTTCTAGTGTGATAGTCTTGCCGGT 24763 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 | || || ||||| | |||||| Sbjct 24764 AAGTGTCTTGACGAAGATTTGCAT 24787 >seq2223 Length=225719 Score = 89.7 bits (98), Expect = 1e-12 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || |||||||| || || || ||||| || | ||||| | ||||| ||| Sbjct 207978 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAGAGAGTGCGGCCATCCTCG 207919 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCT 195048 |||||||| || |||||||| | || || ||||| || ||||| || || |||||| Sbjct 207918 AGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCCGGTGGAATTCCCTCCTTGTCT 207862 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109434249058877