Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudocercospora_20musae_20[genbank_20GCA_5F001578225.1_202016-03- 01] 3,331 sequences; 60,439,160 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq2641 95.1 8e-14 seq1001 89.7 3e-12 >seq2641 Length=38183 Score = 95.1 bits (104), Expect = 8e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 474737 GCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCG 474796 ||||| | |||||||| ||||| || || || || || || |||||||| || ||||| Sbjct 32346 GCAGTCGTCACTGTTCCGGCATACTTCAACGACTCGCAGCGACAAGCAACCAAGGATGCC 32287 Query 474797 GGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTT 474856 || ||||| || || || || | ||||| || || || ||||| ||||| || || Sbjct 32286 GGTCTCATTGCCGGCCTCAACGTCCTCCGTATCATCAACGAGCCAACCGCAGCTGCCATT 32227 Query 474857 GCTTATGGTCTTGATAAGAA 474876 || || |||||||||||||| Sbjct 32226 GCCTACGGTCTTGATAAGAA 32207 >seq1001 Length=158095 Score = 89.7 bits (98), Expect = 3e-12 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611 || || ||||| ||||| || || || || || || || || |||| ||||| Sbjct 25023 CGCAGGCGGAGGACAAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCAGAGAGAGTG 25082 Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671 | | ||| || |||||||| || || ||||| ||||| || ||||| |||||||||||| Sbjct 25083 CGGCCATCCTCGAGTTGCTTGCCGGCGAAAATGAGACGCTGCTGATCCGGAGGAATTCCT 25142 Query 480672 TCCTTGTCTTGAATCTT 480688 |||||||| || ||||| Sbjct 25143 TCCTTGTCCTGGATCTT 25159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268036317247988