Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudocercospora_20musae_20[genbank_20GCA_5F001578225.1_202016-03-
01] 3,331 sequences; 60,439,160 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq2789 134 2e-25
seq2619 122 1e-21
seq1779 120 4e-21
seq3 95.1 1e-13
seq3228 89.7 6e-12
>seq2789
Length=186457
Score = 134 bits (148), Expect = 2e-25
Identities = 141/183 (77%), Gaps = 2/183 (1%)
Strand=Plus/Plus
Query 1592119 CGACATCTCGCCGTGGGACAAGGAGTTT-TGCGACGTCGAGCAGCCCACCCTCTTTGAGT 1592177
||||||| | |||||| || ||||| ||| | ||||| ||| | | || |||
Sbjct 91369 CGACATCGAGGACTGGGACCAGAAGTTTATGC-AGGTCGACCAGGAGATGTTGTTCGAGA 91427
Query 1592178 TGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTG 1592237
| ||||| || |||||||| | || |||||| | || ||||| |||| |||||| |||
Sbjct 91428 TCATCCTTGCTGCCAACTATATGGATATCAAGGCACTTCTCGACGTTGGCTGCAAGACTG 91487
Query 1592238 TGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAGT 1592297
| ||||||||||||||||||||||| || |||||||| |||||||| || |||||| ||
Sbjct 91488 TCGCCAACATGATCAAGGGCAAGTCCCCAGAGGAGATTCGCAAGACGTTCAACATCCAGA 91547
Query 1592298 ACG 1592300
|||
Sbjct 91548 ACG 91550
>seq2619
Length=45072
Score = 122 bits (134), Expect = 1e-21
Identities = 172/242 (71%), Gaps = 0/242 (0%)
Strand=Plus/Minus
Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750
||||| ||| || || || ||| |||||| |||||||||||||| | || || ||
Sbjct 30034 GCCTTCTGGTAGTCACCAACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCTAGAGAAATG 29975
Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810
|||||| | ||| ||||||| | |||||| ||| | ||||| | |
Sbjct 29974 TTCTCCATGAAATCGAATGGGTTGGTGGCGTTGTAGAACTTCTGATTCCCGAGTGCCAAC 29915
Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870
| ||| ||||| ||||||||||||||||||||||||||||| || |||||||||| |
Sbjct 29914 AACAGACGGTCCGCGACAAACTCGATGTACTGGCACATGAGCTTAGCATTCATGCCGAGG 29855
Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930
||| || || |||| || | | || |||| ||| ||| | || || || ||||||
Sbjct 29854 AGCATGACTGGGAGCGCATCTGTGAGGAATTCTTGCTCAATCGCAACAGCTTCAACGATG 29795
Query 868931 AT 868932
||
Sbjct 29794 AT 29793
Score = 96.9 bits (106), Expect = 4e-14
Identities = 200/291 (69%), Gaps = 15/291 (5%)
Strand=Plus/Minus
Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239
|| ||||| || ||||| ||| || || | || |||||||||||||| ||||||
Sbjct 29719 CCCTCGTCACGCGAGATCAATTCATTCGAGAATGTAAGACCGGGCATGAGGCCACGCTTC 29660
Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 869299
|| | ||| ||||||| |||| || ||||| ||||||||||||||||| || |||
Sbjct 29659 TTCAACCAGAAGATGGATGCGAAAGAACCAGAGAAGAAGATGCCCTCGACGGCAGCGAAG 29600
Query 869300 CCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGT---TGATCCACTTCATCGCC 869356
|||| | || |||||| |||||| | ||||| |||||| || |||
Sbjct 29599 GCGATCAATCGGCAGGCAAA--AGTCGAG----TTCTTGTCAGAGATCCATCGCAATGCC 29546
Query 869357 CAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCG-CGAA-AGAGGTGGTC-C 869413
||||| ||||| || | | | || | ||||||||||| ||| ||| || || |
Sbjct 29545 CAGTCAGCCTTCTTACGGATACATGGGATGTTGTCGATGGCGTTGAAGAGATATGATCGC 29486
Query 869414 TTTTCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTCC 869464
| | | || || ||| ||||||||||| || || || || || |||
Sbjct 29485 TGCTTG---GGTTCGCTGATGTAGGTGTCGATAAGCAGGGAGTATGTTTCC 29438
>seq1779
Length=148467
Score = 120 bits (132), Expect = 4e-21
Identities = 209/302 (69%), Gaps = 4/302 (1%)
Strand=Plus/Minus
Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124
|||||| |||||||| || |||| ||| |||| || ||||| || || || ||||||||
Sbjct 97385 CTGGTCAACGTAGCGAGCAGTGTTGTTGTAGACACGCAGCATAGGAACCAGTCCGTTGGA 97326
Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184
| |||||| ||||| | | ||| | ||| | || || | ||| || | ||
Sbjct 97325 CGTGCCGTTCGTGCCTCCGATGTACGAGCCAGTCGCACGGATGCGGTGAACGTTGAGACC 97266
Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244
||||| || || ||||||||| | || || ||||| ||||||||||| |||||
Sbjct 97265 AATGCCTCCAGCGTTCTTGGAGATCATAGCACAAGTCTTGAGAGTGTCGTAGATACCCTC 97206
Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGA--CGAGTTTTGCGGGTGCGCCGTG 1630302
|| |||| |||||||||| || | ||||| || |||| | ||| | | |||
Sbjct 97205 AATGCTGTCGTCCTTCATGTCAACCAAGAAGCATGAGGCGAGCTGTGC--ATTAGGCGTA 97148
Query 1630303 CCGGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAG 1630362
|| ||| | || |||||||||| ||| ||||| ||| |||||| || ||||
Sbjct 97147 CCAGCGCTAAAAAGCGTGGGCGACGCGTGTGTGAAGTACTTGTTGGACATGTAGTTGTAG 97088
Query 1630363 GT 1630364
||
Sbjct 97087 GT 97086
>seq3
Length=84643
Score = 95.1 bits (104), Expect = 1e-13
Identities = 102/135 (76%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 1852499 TTGTCGAGGTGGGCGTGCACGTCGGCAAAGAGGATCTTGACCCGACAGCCGGCCTGGAGA 1852558
||||||||| | | ||||||||||| ||||| | | |||| |||||||| ||
Sbjct 1970 TTGTCGAGGAAGCCATGCACGTCGGCCAAGAGCACCGTGACTTCGCAGCCGGCGGCCAGG 1911
Query 1852559 AAGTCGGCCAGTTTGAAGATGGGCACAAAGTAGCCTAGGTGCGGGTTGCCCGTCGGCGCC 1852618
|| ||||| | |||| ||||| ||||||||||| ||| || |||||||||| |||
Sbjct 1910 AACTCGGCGATCTTGAGCATGGGAACAAAGTAGCCACAGTGAGGCTTGCCCGTCGTTGCC 1851
Query 1852619 GTGCCCCAATATATG 1852633
|||||||| || |||
Sbjct 1850 GTGCCCCAGTAGATG 1836
Score = 93.3 bits (102), Expect = 5e-13
Identities = 130/180 (72%), Gaps = 2/180 (1%)
Strand=Plus/Minus
Query 1852072 CATCTTGCCGCTCTCGGTGAGGCCCGGCACGAGCGGGTTGAGCAGGTGGAAGCGCTTC-C 1852130
||||||||||| || || || || | ||| ||||| | || ||| ||||| |
Sbjct 2409 CATCTTGCCGCCTTCCTGCAGACCGGGAATGAGGGGGTTCATCAAGTGAGCACGCTTTGC 2350
Query 1852131 GATAGCCGAGGACCGGCAGGTGGTCGCGCGCAAAGGCAAATATCTTGCGCTGGTCGCGCC 1852190
|| |||||| | ||| | ||| |||| || || ||||| |||||||| |
Sbjct 2349 GA-AGCCGACGCGCGGTAATGCCTCGACTGCAAGGGTGAAGATCTTCCGCTGGTCCACGC 2291
Query 1852191 CGCCAAACTGGGCGTCGACGTCGAGGTGCTGCTCGTCGAGGGCCTGCATGAGCGGGTAGA 1852250
|||| || || ||||| ||| | |||| || |||||||||||||||||||||||||||||
Sbjct 2290 CGCCGAATTGTGCGTCCACGCCCAGGTACTCCTCGTCGAGGGCCTGCATGAGCGGGTAGA 2231
>seq3228
Length=15945
Score = 89.7 bits (98), Expect = 6e-12
Identities = 75/92 (82%), Gaps = 0/92 (0%)
Strand=Plus/Plus
Query 19101 GGCGAGCCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCG 19160
||||||||||||||||||||| | || || ||| || |||||||||||| || ||
Sbjct 6252 GGCGAGCCGTGCTTTGACAAGCTGGAAGCGAAGCTGGCGCACGCCATGCTGAGCATTCCT 6311
Query 19161 GCCACCAAGGGATTCGAGATTGGCAGCGGGTT 19192
|| ||||||||||||||||| || ||||| ||
Sbjct 6312 GCAACCAAGGGATTCGAGATCGGTAGCGGATT 6343
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6106865842540927
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |