Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudocercospora_20musae_20[genbank_20GCA_5F001578225.1_202016-03- 01] 3,331 sequences; 60,439,160 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq1779 105 6e-18 seq1001 89.7 4e-13 >seq1779 Length=148467 Score = 105 bits (116), Expect = 6e-18 Identities = 278/421 (66%), Gaps = 5/421 (1%) Strand=Plus/Minus Query 131615 GGACACATTAGCGACCACACGCCGTTCTGTTCAACTCGCTTCATAAACAAATCCGGCACC 131674 || ||||| || | |||| ||||||||| ||||| |||||||| |||| |||||| | | Sbjct 97579 GGGCACATGAGGGTCCACTCGCCGTTCTCCTCAACACGCTTCATGAACAGATCCGGGATC 97520 Query 131675 CATAACGCGTACAACAGATCTCTAGCTTTTTTCTCTTCTGTACCCATAAtttttttCAA- 131733 || | ||| | || || || | || ||| ||| | || || || || | Sbjct 97519 CAAAGTGCGAAGAAAAGGTCGCGGGCGCGCACCTCCTCTTTGCC-ATGGTTCTTGCGGAG 97461 Query 131734 ATTTAAAAAGTCCAAAATGTCCGCATGCCAGGGTTCCAAATACACTGCCATTGCGCCTTT 131793 || | || ||| || || || ||||| || || | || | || | || || Sbjct 97460 ATCCATGAATGCCAGAACATCAGCGTGCCATGGCTCGAGGTAAATGGCAAAGGCACCGGG 97401 Query 131794 GCGCTTA---CCGCCTTGATTAACATGACGAACCATGTTGTTGTATACGCGCAACATGGG 131850 |||||| || || || | ||| | ||| | |||||||||| || |||| ||| || Sbjct 97400 GCGCTTGTTGCCACCCTGGTCAACGTAGCGAGCAGTGTTGTTGTAGACACGCAGCATAGG 97341 Query 131851 CTCCAAACCGTTGGCGTTTCCATTGGTGCTCTTAATGTAGCTGCCATTGGCTCTGATTTT 131910 ||| ||||||| | || || |||| ||||| |||| | || | ||| Sbjct 97340 AACCAGTCCGTTGGACGTGCCGTTCGTGCCTCCGATGTACGAGCCAGTCGCACGGATGCG 97281 Query 131911 GTGAACGTTGAGTCCAATACCTCCGCCGTATTTAGAGATTAGTGCGCATTTGGTTAGAGT 131970 |||||||||||| ||||| ||||| ||| || ||||| | || || | | ||||| Sbjct 97280 GTGAACGTTGAGACCAATGCCTCCAGCGTTCTTGGAGATCATAGCACAAGTCTTGAGAGT 97221 Query 131971 GTTATAGATACCTTCCACGCTGTCCGCGGCAATGTCGACTAAAAAGCAAGAGGACAACTG 132030 || |||||||| || | |||||| | ||||| || || ||||| |||| | ||| Sbjct 97220 GTCGTAGATACCCTCAATGCTGTCGTCCTTCATGTCAACCAAGAAGCATGAGGCGAGCTG 97161 Query 132031 T 132031 | Sbjct 97160 T 97160 >seq1001 Length=158095 Score = 89.7 bits (98), Expect = 4e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 27057 TCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAA 27116 || || || || ||||||||||||| | || |||| || ||||| || || ||| | Sbjct 24597 TCCTTCTGGATGTTGTAGTCGCTCAATGTCCGGCCGTCCTCAAGCTGCTTGCCAGCGAAG 24656 Query 27117 ATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTT 27176 ||||| ||||| || || || || | ||||| || || ||||| || | | Sbjct 24657 ATGAGGCGCTGCTGGTCTGGTGGGATGCCCTCCTTGTCTTGAATCTTCGACTTGACATTG 24716 Query 27177 TCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACA 27236 || | ||||||| | ||| |||||||| || |||| ||||| || || || || || Sbjct 24717 TCGATGGTGTCTGAAGATTCCACTTCTAGTGTGATAGTCTTGCCGGTAAGTGTCTTGACG 24776 Query 27237 AAGATTTGCATA 27248 |||||||||||| Sbjct 24777 AAGATTTGCATA 24788 Score = 86.0 bits (94), Expect = 5e-12 Identities = 124/175 (71%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || ||||| |||||||| | |||| | || ||||| || || ||| Sbjct 25047 GTGGACTCCTTCTGAATGTTGTAGTCAGAGAGAGTGCGGCCATCCTCGAGTTGCTTGCCG 25106 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| ||||||||||||| |||||||| || | || || || || ||||||| | ||| Sbjct 25107 GCGAAAATGAGACGCTGCTGATCCGGAGGAATTCCTTCCTTGTCCTGGATCTTGCTCTTC 25166 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCA 27225 | | || | |||||| | || ||||| || || || || | ||||| |||| Sbjct 25167 ACATTGTCGATAGTGTCGGAGGACTCAACCTCGAGGGTGATGGTCTTGCCGGTCA 25221 Score = 82.4 bits (90), Expect = 6e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || ||||||||| || | | || |||| |||||||| || || Sbjct 24819 GTGGACTCCTTCTGGATGTTGTAGTCGGACAAGGTCCGGCCGTCCTCGAGCTGCTTGCCA 24878 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | || | ||||| || || || || | |||||| || || ||||||| || Sbjct 24879 GCGAAGATCAAGCGCTGCTGGTCTGGTGGAATACCCTCCTTGTCTTGGATCTTGGACTTG 24938 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | |||||| | | ||||| || || || |||| || || || || || Sbjct 24939 ACATTGTCAATAGTGTCGGAAGACTCAACCTCGAGGGTGATAGTCTTTCCAGTGAGCGTC 24998 Query 27231 TTCACAAAGATTTGCATA 27248 || || |||||||||||| Sbjct 24999 TTGACGAAGATTTGCATA 25016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424917149124072