Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudocercospora_20musae_20[genbank_20GCA_5F001578225.1_202016-03- 01] 3,331 sequences; 60,439,160 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq435 132 1e-25 seq1001 127 6e-24 >seq435 Length=71824 Score = 132 bits (146), Expect = 1e-25 Identities = 233/339 (69%), Gaps = 3/339 (1%) Strand=Plus/Plus Query 349562 AAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACT 349621 ||||||||||| | || || | ||| | ||||| | || | || ||| | ||| Sbjct 37666 AAAATGAAGGAGGTCGCCGAGTCTTATCTTGGTGAGAAGGTCCACAACGCAGTTGTCACT 37725 Query 349622 GTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCG 349681 || || ||||| || || || || ||||| |||| || || |||||||| | || || Sbjct 37726 GTTCCTGCCTACTTCAACGACGCTCAGCGCGCTGCCACCAAGGATGCTGGTACTATCGCA 37785 Query 349682 GGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTT 349741 || | ||||| || || | |||||||||| ||||| || || | || || || || Sbjct 37786 GGCCTCAATGTGCTGCGAGTCGTTAATGAACCTACTGCCGCCGCTCTCGCCTACGGTCTC 37845 Query 349742 GATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTT 349801 || || || |||| | ||| | || | | | ||| | ||||||||||||||| Sbjct 37846 GACAA---GACTGACAAGGAACGCCAGATCATAGTCTACGATCTTGGTGGTGGTACTTTT 37902 Query 349802 GATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGAT 349861 ||||| || | || || |||| | || | || || || | || || |||||||| Sbjct 37903 GATGTCTCCATCCTGACCGTTGACCAAGGTGTCTTCGAGGTCCAGGCTACCGCTGGTGAC 37962 Query 349862 ACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTT 349900 || ||||||||||| |||||||| ||| | ||| | ||| Sbjct 37963 ACCCATCTTGGTGGTGAAGATTTCGATCAGCGTGTTGTT 38001 >seq1001 Length=158095 Score = 127 bits (140), Expect = 6e-24 Identities = 157/212 (74%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| ||||||||| || | | || ||||| || || || ||||| || ||||| || | Sbjct 25009 TTTGCATACCACCGCGCAGGCGGAGGACAAGGTGGAGGGTGGACTCCTTCTGAATGTTGT 25068 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | ||||| | || || ||||| || ||||| || || || || || ||||| ||||||| Sbjct 25069 AGTCAGAGAGAGTGCGGCCATCCTCGAGTTGCTTGCCGGCGAAAATGAGACGCTGCTGAT 25128 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT-TTTACATTATCAATCGAATCAGAT 140681 | |||||||||||||| || ||||| || || ||| || ||||| || || | || || Sbjct 25129 CCGGAGGAATTCCTTCCTTGTCCTGGATCTT-GCTCTTCACATTGTCGATAGTGTCGGAG 25187 Query 140682 GGTTCAACTTCAAGTGTAACTGTCTTTCCGGT 140713 | ||||| || || || | ||||| ||||| Sbjct 25188 GACTCAACCTCGAGGGTGATGGTCTTGCCGGT 25219 Score = 118 bits (130), Expect = 3e-21 Identities = 167/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | || ||||| || ||||| ||||| || || || || | Sbjct 24781 TTTGCATACCACCACGGAGACGAAGGACAAGGTGGAGAGTGGACTCCTTCTGGATGTTGT 24840 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || || || || || || || || || || || ||||| ||||| | || ||||| | Sbjct 24841 AGTCGGACAAGGTCCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGGT 24900 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | || ||||| || || || || || || || | || ||||| ||||| | || || | Sbjct 24901 CTGGTGGAATACCCTCCTTGTCTTGGATCTTGGACTTGACATTGTCAATAGTGTCGGAAG 24960 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||| || || || | |||||||| || || || || || || || ||||| Sbjct 24961 ACTCAACCTCGAGGGTGATAGTCTTTCCAGTGAGCGTCTTGACGAAGATTTGCAT 25015 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515189731309793