Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudocercospora_20musae_20[genbank_20GCA_5F001578225.1_202016-03- 01] 3,331 sequences; 60,439,160 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq1001 84.2 1e-11 seq2223 82.4 5e-11 >seq1001 Length=158095 Score = 84.2 bits (92), Expect = 1e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||||| || |||||||||||||| || ||||| || || | ||| || Sbjct 24570 AGACGGAGCACCAAGTGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAATGTCCGG 24629 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| ||||| || || || || || || | ||||| ||||| || || | |||||| Sbjct 24630 CCGTCCTCAAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCTGGTGGGATGCCCTCC 24689 Query 34609 TTGTCTGTGATCTT 34622 |||||| ||||| Sbjct 24690 TTGTCTTGAATCTT 24703 >seq2223 Length=225719 Score = 82.4 bits (90), Expect = 5e-11 Identities = 89/118 (75%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 |||| ||||| ||| |||||| || ||||| || || || || || || | || || Sbjct 207978 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAGAGAGTGCGGCCATCCTCG 207919 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTG 34615 || || || ||||| || || || ||||| |||||||| || | |||||||||||||| Sbjct 207918 AGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCCGGTGGAATTCCCTCCTTGTCTG 207861 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314716823060123