Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudocercospora_20musae_20[genbank_20GCA_5F001578225.1_202016-03- 01] 3,331 sequences; 60,439,160 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq1001 167 5e-36 seq224 132 1e-25 seq1779 129 1e-24 >seq1001 Length=158095 Score = 167 bits (184), Expect = 5e-36 Identities = 164/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||||||||| ||||||||||| || |||||||| || || | | ||||| || || Sbjct 24804 AGGACAAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAAGGTCCGGCCGTCC 24863 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| |||||||| | ||| || ||||| || |||| || |||||||| Sbjct 24864 TCGAGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCTGGTGGAATACCCTCCTTGTCT 24923 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || || || ||||| || ||||||||||| ||||| ||| Sbjct 24924 TGGATCTTGGACTTGACATTGTCAATAGTGTCGGAAGACTCAACCTCGAGGGTGATAGTC 24983 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| ||||| ||||| || || | ||||| Sbjct 24984 TTTCCAGTGAGCGTCTTGACGAAGATTTGCAT 25015 Score = 154 bits (170), Expect = 3e-32 Identities = 147/188 (78%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||||||||| || |||||||| || || ||||| || || | || || | ||||| Sbjct 25032 AGGACAAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCAGAGAGAGTGCGGCCATCC 25091 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || || |||||||| ||||| || || || || || || ||||||| ||||||||||||| Sbjct 25092 TCGAGTTGCTTGCCGGCGAAAATGAGACGCTGCTGATCCGGAGGAATTCCTTCCTTGTCC 25151 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||||| || ||||| ||||| ||| ||||||||||| ||||| ||| Sbjct 25152 TGGATCTTGCTCTTCACATTGTCGATAGTGTCGGAGGACTCAACCTCGAGGGTGATGGTC 25211 Query 211083 TTTCCCGT 211090 || || || Sbjct 25212 TTGCCGGT 25219 Score = 125 bits (138), Expect = 2e-23 Identities = 157/213 (74%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGGTCCTTCCATC 210961 || || | ||| |||||| ||| || |||||||| || || | ||| | ||| || || Sbjct 24576 AGCACCAAGTGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAATG-TCCGGCCGTC 24634 Query 210962 TTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTC 211021 || ||||||||||| |||||||| ||||| || ||||| || || | || |||||||| Sbjct 24635 CTCAAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCTGGTGGGATGCCCTCCTTGTC 24694 Query 211022 CTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGT 211081 || ||||| || || || ||||||||||| || ||| || || || ||||| || Sbjct 24695 TTGAATCTTCGACTTGACATTGTCGATGGTGTCTGAAGATTCCACTTCTAGTGTGATAGT 24754 Query 211082 CTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||| || || || ||||| || || | ||||| Sbjct 24755 CTTGCCGGTAAGTGTCTTGACGAAGATTTGCAT 24787 >seq224 Length=177688 Score = 132 bits (146), Expect = 1e-25 Identities = 142/188 (76%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977 ||| || | ||||||||||| || || | | || | ||||| |||| ||||| || Sbjct 19034 GTGCACACCTTTTGGATGTTGTAGTCAGACAAAGTGCGGCCATCCTCCAATTGCTTTCCA 19093 Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037 |||||||| || || || ||||| || |||| ||| ||||||||||| ||||| || Sbjct 19094 GCGAAGATCAGACGCTGCTGGTCCGGTGGAATTCCCTCCTTGTCCTGAATCTTGCTCTTG 19153 Query 211038 ACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTC 211097 || || ||||||||||| ||| || ||||| || ||||| ||||| |||||||| ||| Sbjct 19154 ACATTATCGATGGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTC 19213 Query 211098 TTTACAAA 211105 || || || Sbjct 19214 TTGACGAA 19221 >seq1779 Length=148467 Score = 129 bits (142), Expect = 1e-24 Identities = 199/283 (70%), Gaps = 6/283 (2%) Strand=Plus/Minus Query 178088 CCAAAGTTCTTTTGGTTGCTCTTTC---TGCAAATGGCATCTTTGTACGCAATGAAGGGC 178144 |||| |||||| ||||||||||| | ||||| ||||| ||||| ||||| || Sbjct 97783 CCAAGGTTCTTCTGGTTGCTCTTGCGGTTGCAA---GCATCCTTGTAAAGGATGAAAGGG 97727 Query 178145 ATTCCCACCTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAGTC 178204 || ||| | |||||| | |||||| || ||| | || |||||| || |||||| Sbjct 97726 CCGCCGGTCTCCGTCTGAGCCTCAAGAATGGCATACCAGATCTTCTGGGCGCGAACAGTC 97667 Query 178205 TTTTTGGCTTTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAG 178264 | | | || || |||||||||| | |||||||| |||||| ||| ||||| Sbjct 97666 TCGCGGCCACGACCCTCCTTCTCGTACTGCTCGTAGAGCTTCTCGAAGTCCTCGCCATAA 97607 Query 178265 ACATCATCGAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCGTCTTCCTTC 178324 ||||| ||||||| || |||||| ||||| | ||| |||||| |||| |||| Sbjct 97606 ACATCTGCGAGACCAGGGCACTCATTCGGGCACATGAGGGTCCACTCGCCGTTCTCCTCA 97547 Query 178325 ACTCGTTTCATGAAGAGGTCAGAGGTCCAGATGGCATAGAAAA 178367 || || |||||||| || || | | |||| | || |||||| Sbjct 97546 ACACGCTTCATGAACAGATCCGGGATCCAAAGTGCGAAGAAAA 97504 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159102529203815