Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudocercospora_20musae_20[genbank_20GCA_5F001578225.1_202016-03- 01] 3,331 sequences; 60,439,160 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq1001 113 1e-19 seq224 111 4e-19 seq1779 87.8 4e-12 >seq1001 Length=158095 Score = 113 bits (124), Expect = 1e-19 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 |||||||| || ||||| ||||| || ||||||||||| |||| || || | || || Sbjct 24804 AGGACAAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAAGGTCCGGCCGTCC 24863 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || |||||||| | | ||||||||| | | || || ||||| ||| Sbjct 24864 TCGAGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCTGGTGGAATACCCTCCTTGTCT 24923 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || |||||| | || | |||| ||| ||| || || || || ||||| Sbjct 24924 TGGATCTTGGACTTGACATTGTCAATAGTGTCGGAAGACTCAACCTCGAGGGTGATAGTC 24983 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || ||||| ||||| ||||||| ||||| Sbjct 24984 TTTCCAGTGAGCGTCTTGACGAAGATTTGCAT 25015 Score = 111 bits (122), Expect = 4e-19 Identities = 150/208 (72%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || ||||| ||| || ||||||||||| ||| || || | || || || | Sbjct 24581 CAAG-TGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAATGTCCGGCCGTCCTCAA 24639 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || || |||||||| || | ||||||||| | | ||| || ||||| ||||||| Sbjct 24640 GCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCTGGTGGGATGCCCTCCTTGTCTTGAA 24699 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || |||||| | || | | |||||||| || ||||| || || ||||| |||| Sbjct 24700 TCTTCGACTTGACATTGTCGATGGTGTCTGAAGATTCCACTTCTAGTGTGATAGTCTTGC 24759 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || || ||||| ||||||| ||||| Sbjct 24760 CGGTAAGTGTCTTGACGAAGATTTGCAT 24787 >seq224 Length=177688 Score = 111 bits (122), Expect = 4e-19 Identities = 135/182 (74%), Gaps = 4/182 (2%) Strand=Plus/Plus Query 151917 TTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA--GGCTTTTCCCGGCGAAGA 151974 |||||||||||||| || | ||||| | ||||| || | ||||| || ||||||| Sbjct 19043 TTTTGGATGTTGTAGTCAGACAAAGTGCGGCCATCCTCCAATTGCTTT--CCAGCGAAGA 19100 Query 151975 TAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCT 152034 | || | ||||||||||| | ||||| ||||| || ||||| || |||||| | | Sbjct 19101 TCAGACGCTGCTGGTCCGGTGGAATTCCCTCCTTGTCCTGAATCTTGCTCTTGACATTAT 19160 Query 152035 CTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGA 152094 | | | |||| || ||| || ||||| || || || ||||||||||| ||||| |||| Sbjct 19161 CGATGGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGA 19220 Query 152095 AG 152096 || Sbjct 19221 AG 19222 >seq1779 Length=148467 Score = 87.8 bits (96), Expect = 4e-12 Identities = 110/151 (73%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 115627 TTTTCTATGCCATTTGGACATCTGATCTTTTTATGAAGCGAGTCAAGGCAAACGGAATGT 115686 |||||| || |||||| | ||||| || |||||||| || ||| ||||| || Sbjct 97504 TTTTCTTCGCACTTTGGATCCCGGATCTGTTCATGAAGCGTGTTGAGGAGAACGGCGAGT 97563 Query 115687 GGAGCCTCTTTTGTCCCAATGAAGCCCCTGGTCTTGATGATGTTTATGGTCCAGAGTTTG 115746 ||| |||| | || || ||||| ||||||||| | ||||||||||| || || | Sbjct 97564 GGACCCTCATGTGCCCGAATGAGTGCCCTGGTCTCGCAGATGTTTATGGCGAGGACTTCG 97623 Query 115747 AGAATCTTTACGAAAGGTACGAGAAAGAGGG 115777 |||| || ||||| ||||||||| ||||| Sbjct 97624 AGAAGCTCTACGAGCAGTACGAGAAGGAGGG 97654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153771556731101