Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudocercospora_20musae_20[genbank_20GCA_5F001578225.1_202016-03-
01] 3,331 sequences; 60,439,160 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq224 134 3e-26
seq1001 132 1e-25
seq2223 87.8 4e-12
>seq224
Length=177688
Score = 134 bits (148), Expect = 3e-26
Identities = 137/179 (77%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 177930 TTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATC 177989
||||| || || ||||| || || || |||||||| ||||| || ||| |||||||||
Sbjct 19221 TTCGTCAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGACACCATC 19162
Query 177990 GAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTT 178049
|| || ||||| |||||||||||||| || ||||| || ||||||||||| || ||
Sbjct 19161 GATAATGTCAAGAGCAAGATTCAGGACAAGGAGGGAATTCCACCGGACCAGCAGCGTCTG 19102
Query 178050 ATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108
|||||||| ||||| || | || ||||| | ||| | | || || ||| |||||||
Sbjct 19101 ATCTTCGCTGGAAAGCAATTGGAGGATGGCCGCACTTTGTCTGACTACAACATCCAAAA 19043
>seq1001
Length=158095
Score = 132 bits (146), Expect = 1e-25
Identities = 155/207 (75%), Gaps = 2/207 (1%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||| ||||| || || ||||| ||||| || |||||||||||||| || || |||
Sbjct 25012 CAAATCTTCGTCAAGACGCTCACTGGAAAGACTATCACCCTCGAGGTTGAGTCTTCCGAC 24953
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || || || ||||| ||||| || ||||| || || || || || ||||||||
Sbjct 24952 ACTATTGACAATGTCAAGTCCAAGATCCAAGACAAGGAGGGTATTCCACCAGACCAGCAG 24893
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102
|| | |||||||| || || |||||||| || || |||| |||| |||| || ||| |
Sbjct 24892 CGCTTGATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGGAC-CTTGTCCGACTACAACAT 24834
Query 178103 CCAAAAAGAATCAACACTGCATCTTGT 178129
||| || || || || || || |||||
Sbjct 24833 CCAGAAGGAGTCCACTCTCCACCTTGT 24807
Score = 127 bits (140), Expect = 5e-24
Identities = 139/185 (75%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAA 178004
|| || || || |||||||||||||| || ||| ||||| ||||| || || ||
Sbjct 25219 ACCGGCAAGACCATCACCCTCGAGGTTGAGTCCTCCGACACTATCGACAATGTGAAGAGC 25160
Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064
||||| |||||||| |||||||| |||||||| ||||| || || || |||||||| ||
Sbjct 25159 AAGATCCAGGACAAGGAAGGAATTCCTCCGGATCAGCAGCGTCTCATTTTCGCCGGCAAG 25100
Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124
|| ||||| ||||| | ||||| | || || ||| | || || || || || || ||
Sbjct 25099 CAACTCGAGGATGGCCGCACTCTCTCTGACTACAACATTCAGAAGGAGTCCACCCTCCAC 25040
Query 178125 CTTGT 178129
|||||
Sbjct 25039 CTTGT 25035
Score = 123 bits (136), Expect = 6e-23
Identities = 140/188 (74%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||| ||||| || || || || || || || ||||| || || |||||| ||||||
Sbjct 24784 CAAATCTTCGTCAAGACACTTACCGGCAAGACTATCACACTAGAAGTGGAATCTTCAGAC 24725
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| || ||||| |||||||| ||||| || || ||||| || ||||||||
Sbjct 24724 ACCATCGACAATGTCAAGTCGAAGATTCAAGACAAGGAGGGCATCCCACCAGACCAGCAG 24665
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || |||||||| || || ||||| || || || |||| | ||| || ||| ||
Sbjct 24664 CGCCTCATCTTCGCTGGCAAGCAGCTTGAGGACGGCCGGACATTGAGCGACTACAACATC 24605
Query 178104 CAAAAAGA 178111
|| || ||
Sbjct 24604 CAGAAGGA 24597
>seq2223
Length=225719
Score = 87.8 bits (96), Expect = 4e-12
Identities = 89/116 (77%), Gaps = 0/116 (0%)
Strand=Plus/Plus
Query 178014 GACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAA 178073
||||| || ||||| || ||||||||||| || | |||||||||||||| ||||||||
Sbjct 207863 GACAAGGAGGGAATTCCACCGGACCAGCAGCGCTTGATCTTCGCCGGAAAGCAGCTCGAG 207922
Query 178074 GATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129
||||| | ||||| | || || ||| |||| || || || || || || || ||
Sbjct 207923 GATGGCCGCACTCTCTCGGACTACAACATCCAGAAGGAGTCCACCCTCCACCTGGT 207978
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203679826633214
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |