Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20destructans_20[genbank_20GCA_5F001641265.1_202016 -05-10] 83 sequences; 35,818,201 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq3 116 4e-21 >seq3 Length=1861714 Score = 116 bits (128), Expect = 4e-21 Identities = 364/556 (65%), Gaps = 11/556 (2%) Strand=Plus/Minus Query 23831 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTC 23890 ||| || || | |||||||| || | ||||| || || || || || || || ||| | Sbjct 165525 CATGACACCAGTCTTTTGGTAGTCGGCGACACGCTTCTCAAAGAAGTTGGTCTTTCCTGC 165466 Query 23891 TAATGATATATTTTCCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAATCC 23950 | || || || |||||||| ||| |||| ||||| | || ||| | ||| | | | Sbjct 165465 CAGGGAGATGTTCTCCATGAAGTCGAATGGGTTGGTCGCCTTGTAG-TACTTCTCGTTAC 165407 Query 23951 CAATTCAGAA-ATCAATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAAT 24009 | | ||| | || || || ||||| ||||| || ||| ||||||| | | Sbjct 165406 CGAGGGAGAGTAGCAGCCTGTCGGCGACGAACTCAATGTATTGCTTCATCAAGTTGGCGT 165347 Query 24010 TCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCG 24069 |||| || | || | ||||| ||| |||| | || ||||| || || ||||| | Sbjct 165346 TCATGCCGAGCAGCGCACAGGGAAGTGCCTCAGTCAAGAACTCTTGCTCGATGGAGACAG 165287 Query 24070 CGTCTGTTATAATAGATCTT--ACTGTTT-CTTCACTCGGTGGATACAATAAATGTTTAA 24126 | || || || | |||| || | | ||| | || || | | | || | Sbjct 165286 CCTCGGTAATGACG--TCTTGGACGGCCTGCTTGCTTGGGCGGTGTCTA-AGGTGGGAGA 165230 Query 24127 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 24186 | | | || ||||| || ||| ||||||||||| | || | ||||| || | Sbjct 165229 AGAGGAGGCAGGCGAAGTCAGTGTGGAGACCCTCGTCACGGGAGATGAGCTCGTTCGAGA 165170 Query 24187 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAG 24246 | || || |||| ||| ||||||||||| || ||||| || ||||| || || || || | Sbjct 165169 AGGTCAGGCCGGCCATGAGGCCACGCTTCTTGAGCCAGAAAATGGAGGCGAAGGAGCCGG 165110 Query 24247 AAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGG---CGC 24303 | ||||| || || || || || || ||||||| || | | | | || | Sbjct 165109 AGAAGAAGATACCCTCAACGGCGGCGAAGGCAACGAGGCGCTGAGCGAAGGTGGAATCCT 165050 Query 24304 TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTA 24363 |||| || |||||| | ||||| ||||||||||| || | ||||| || ||||| | Sbjct 165049 TGTCTTGGATCCACCTAACTGCCCAGTCGGCCTTCTTCTTAATGCAAGGAATGGTCTCGA 164990 Query 24364 TAGCATTAAAGAGATA 24379 | ||||| ||||| || Sbjct 164989 TGGCATTGAAGAGGTA 164974 Score = 116 bits (128), Expect = 4e-21 Identities = 364/556 (65%), Gaps = 11/556 (2%) Strand=Plus/Minus Query 23831 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTC 23890 ||| || || | |||||||| || | ||||| || || || || || || || ||| | Sbjct 175381 CATGACACCAGTCTTTTGGTAGTCGGCGACACGCTTCTCAAAGAAGTTGGTCTTTCCTGC 175322 Query 23891 TAATGATATATTTTCCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAATCC 23950 | || || || |||||||| ||| |||| ||||| | || ||| | ||| | | | Sbjct 175321 CAGGGAGATGTTCTCCATGAAGTCGAATGGGTTGGTCGCCTTGTAG-TACTTCTCGTTAC 175263 Query 23951 CAATTCAGAA-ATCAATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAAT 24009 | | ||| | || || || ||||| ||||| || ||| ||||||| | | Sbjct 175262 CGAGGGAGAGTAGCAGCCTGTCGGCGACGAACTCAATGTATTGCTTCATCAAGTTGGCGT 175203 Query 24010 TCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCG 24069 |||| || | || | ||||| ||| |||| | || ||||| || || ||||| | Sbjct 175202 TCATGCCGAGCAGCGCACAGGGAAGTGCCTCAGTCAAGAACTCTTGCTCGATGGAGACAG 175143 Query 24070 CGTCTGTTATAATAGATCTT--ACTGTTT-CTTCACTCGGTGGATACAATAAATGTTTAA 24126 | || || || | |||| || | | ||| | || || | | | || | Sbjct 175142 CCTCGGTAATGACG--TCTTGGACGGCCTGCTTGCTTGGGCGGTGTCTA-AGGTGGGAGA 175086 Query 24127 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 24186 | | | || ||||| || ||| ||||||||||| | || | ||||| || | Sbjct 175085 AGAGGAGGCAGGCGAAGTCAGTGTGGAGACCCTCGTCACGGGAGATGAGCTCGTTCGAGA 175026 Query 24187 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAG 24246 | || || |||| ||| ||||||||||| || ||||| || ||||| || || || || | Sbjct 175025 AGGTCAGGCCGGCCATGAGGCCACGCTTCTTGAGCCAGAAAATGGAGGCGAAGGAGCCGG 174966 Query 24247 AAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGG---CGC 24303 | ||||| || || || || || || ||||||| || | | | | || | Sbjct 174965 AGAAGAAGATACCCTCAACGGCGGCGAAGGCAACGAGGCGCTGAGCGAAGGTGGAATCCT 174906 Query 24304 TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTA 24363 |||| || |||||| | ||||| ||||||||||| || | ||||| || ||||| | Sbjct 174905 TGTCTTGGATCCACCTAACTGCCCAGTCGGCCTTCTTCTTAATGCAAGGAATGGTCTCGA 174846 Query 24364 TAGCATTAAAGAGATA 24379 | ||||| ||||| || Sbjct 174845 TGGCATTGAAGAGGTA 174830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593720984013840