Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20destructans_20[genbank_20GCA_5F001641265.1_202016 -05-10] 83 sequences; 35,818,201 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq3 113 6e-20 seq71 104 3e-17 seq25 102 1e-16 >seq3 Length=1861714 Score = 113 bits (124), Expect = 6e-20 Identities = 174/248 (70%), Gaps = 3/248 (1%) Strand=Plus/Minus Query 36158 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 36217 || ||||| || ||| ||||||||||| | || | ||||| || || || || Sbjct 165221 CAGGCGAAGTCAGTGTGGAGACCCTCGTCACGGGAGATGAGCTCGTTCGAGAAGGTCAGG 165162 Query 36218 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 36277 |||| ||| ||||||||||| || ||||| || ||||| || || || || || ||||| Sbjct 165161 CCGGCCATGAGGCCACGCTTCTTGAGCCAGAAAATGGAGGCGAAGGAGCCGGAGAAGAAG 165102 Query 36278 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CACTGTCATGT 36334 || || || || || || ||||||| || | || | | || | |||| || Sbjct 165101 ATACCCTCAACGGCGGCGAAGGCAACGAGGCGCTGAGCGAAGGTGGAATCCTTGTCTTGG 165042 Query 36335 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTA 36394 |||||| | ||||| ||||||||||| || | ||||| || ||||| || ||||| Sbjct 165041 ATCCACCTAACTGCCCAGTCGGCCTTCTTCTTAATGCAAGGAATGGTCTCGATGGCATTG 164982 Query 36395 AAGAGATA 36402 ||||| || Sbjct 164981 AAGAGGTA 164974 Score = 113 bits (124), Expect = 6e-20 Identities = 174/248 (70%), Gaps = 3/248 (1%) Strand=Plus/Minus Query 36158 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 36217 || ||||| || ||| ||||||||||| | || | ||||| || || || || Sbjct 175077 CAGGCGAAGTCAGTGTGGAGACCCTCGTCACGGGAGATGAGCTCGTTCGAGAAGGTCAGG 175018 Query 36218 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 36277 |||| ||| ||||||||||| || ||||| || ||||| || || || || || ||||| Sbjct 175017 CCGGCCATGAGGCCACGCTTCTTGAGCCAGAAAATGGAGGCGAAGGAGCCGGAGAAGAAG 174958 Query 36278 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CACTGTCATGT 36334 || || || || || || ||||||| || | || | | || | |||| || Sbjct 174957 ATACCCTCAACGGCGGCGAAGGCAACGAGGCGCTGAGCGAAGGTGGAATCCTTGTCTTGG 174898 Query 36335 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTA 36394 |||||| | ||||| ||||||||||| || | ||||| || ||||| || ||||| Sbjct 174897 ATCCACCTAACTGCCCAGTCGGCCTTCTTCTTAATGCAAGGAATGGTCTCGATGGCATTG 174838 Query 36395 AAGAGATA 36402 ||||| || Sbjct 174837 AAGAGGTA 174830 >seq71 Length=14946 Score = 104 bits (114), Expect = 3e-17 Identities = 173/248 (70%), Gaps = 4/248 (2%) Strand=Plus/Plus Query 36158 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 36217 || ||||| || ||| ||||||||||| | || | ||||| || || || || Sbjct 12509 CAGGCGAAGTCAGTGTGGAGACCCTCGTCACGGGAGATGAGCTCGTTCGAGAAGGTCAGG 12568 Query 36218 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 36277 |||| ||| ||||||||||| || ||||| || ||||| || || || || || ||||| Sbjct 12569 CCGGCCATGAGGCCACGCTTCTTGAGCCAGAAAATGGAGGCGAAGGAGCCGGAGAAGAAG 12628 Query 36278 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CACTGTCATGT 36334 || || || || | || ||||||| || | || | | || | |||| || Sbjct 12629 ATACCCTCAAC-GGGGCGAAGGCAACGAGGCGCTGAGCGAAGGTGGAATCCTTGTCTTGG 12687 Query 36335 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTA 36394 |||||| | ||||| ||||||||||| || | ||||| || ||||| || ||||| Sbjct 12688 ATCCACCTAACTGCCCAGTCGGCCTTCTTCTTAATGCAAGGAATGGTCTCGATGGCATTG 12747 Query 36395 AAGAGATA 36402 ||||| || Sbjct 12748 AAGAGGTA 12755 >seq25 Length=557695 Score = 102 bits (112), Expect = 1e-16 Identities = 248/372 (67%), Gaps = 8/372 (2%) Strand=Plus/Plus Query 36200 TCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA 36259 ||||| || || || || || | ||| ||||||||||| || ||||| || || || || Sbjct 29598 TCGTTCGAGAAGGTCAGACCAGCCATGAGGCCACGCTTGTTGAGCCAGAAAATAGAGGCG 29657 Query 36260 AATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA- 36318 || || || || ||||| || || || || || || ||||||| || | || || | Sbjct 29658 AAGGAGCCGGAGAAGAAGATACCCTCAACGGCAGCGAAGGCAACGAGACGCTGAGCAAAG 29717 Query 36319 --ACCGGCACTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGC 36376 | | |||| ||||||||| | ||||| ||||||||||| || | ||||| Sbjct 29718 GTAGAATCCTTGTCTTGTATCCACCTAACTGCCCAGTCGGCCTTCTTCTTGATGCAAGGA 29777 Query 36377 ATTGTCTCTATAGCATTAAAGAGATAGtttttttCA--TTACTATCTTTAACATATGTAT 36434 || ||||| || ||||| ||||| || | || | |||| || || | ||||| | Sbjct 29778 ATGGTCTCAATGGCATTGAAGAGGTATGTGCGTTGAGCTTAC--TCCTTGATGTATGTGT 29835 Query 36435 CAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGA 36494 | || | || || | || | |||||||| || || ||||| || ||||||| Sbjct 29836 CGATGAGGAGGAAGTATGTCTCGGCGTGAATGTTCTCGATCATGATTTGGAAACCGTAGA 29895 Query 36495 A-ACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTC 36553 | ||| | || || | || || ||||| | | || || || | || || || Sbjct 29896 AGACAGCGGGCTTCTGGGATTTGGACTTCGCTGCTGAAGCGCTCGAGGAGGTTCTCGTTG 29955 Query 36554 ACTATTCCGTCA 36565 || ||||||||| Sbjct 29956 ACAATTCCGTCA 29967 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658172117145720