Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20destructans_20[genbank_20GCA_5F001641265.1_202016 -05-10] 83 sequences; 35,818,201 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq3 136 6e-27 seq71 129 8e-25 seq25 116 5e-21 >seq3 Length=1861714 Score = 136 bits (150), Expect = 6e-27 Identities = 364/553 (66%), Gaps = 5/553 (1%) Strand=Plus/Minus Query 49656 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTC 49715 ||| || || | |||||||| || | ||||| || || || || || || |||||| | Sbjct 165525 CATGACACCAGTCTTTTGGTAGTCGGCGACACGCTTCTCAAAGAAGTTGGTCTTTCCTGC 165466 Query 49716 CAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCC 49775 || || || || |||||||| || || || ||||| | || || | || | | | Sbjct 165465 CAGGGAGATGTTCTCCATGAAGTCGAATGGGTTGGTCGCCTTGTAG-TACTTCTCGTTAC 165407 Query 49776 CAATTCAGAA-ATCAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAAT 49834 | | ||| | || || || ||||| || || || ||| ||||||| | | Sbjct 165406 CGAGGGAGAGTAGCAGCCTGTCGGCGACGAACTCAATGTATTGCTTCATCAAGTTGGCGT 165347 Query 49835 TCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCG 49894 |||| || | || | ||||| ||| |||| | || ||||| || ||||| || | Sbjct 165346 TCATGCCGAGCAGCGCACAGGGAAGTGCCTCAGTCAAGAACTCTTGCTCGATGGAGACAG 165287 Query 49895 CATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACA 49954 | || || || | | |||| | | || || | || | || || | Sbjct 165286 CCTCGGTAATGACGTCTTGGACGGCCTGCTTGCTTGGGCGGTGTCTAAGGTGGGAGAAGA 165227 Query 49955 TCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACG 50014 | || ||||| || ||| ||||||||||| | || || ||||| || || | Sbjct 165226 GGAGGCAGGCGAAGTCAGTGTGGAGACCCTCGTCACGGGAGATGAGCTCGTTCGAGAAGG 165167 Query 50015 TGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAA 50074 | || |||| ||| ||||||||||| || ||||| || ||||| || || || || || | Sbjct 165166 TCAGGCCGGCCATGAGGCCACGCTTCTTGAGCCAGAAAATGGAGGCGAAGGAGCCGGAGA 165107 Query 50075 AGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGG---CGCTGT 50131 ||||||| || || || ||||| |||||||| || | || | | ||| | ||| Sbjct 165106 AGAAGATACCCTCAACGGCGGCGAAGGCAACGAGGCGCTGAGCGAAGGTGGAATCCTTGT 165047 Query 50132 CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGG 50191 | || |||||| | ||||| ||||||||||| || | ||||| || || || |||| Sbjct 165046 CTTGGATCCACCTAACTGCCCAGTCGGCCTTCTTCTTAATGCAAGGAATGGTCTCGATGG 164987 Query 50192 CATTAAAGAGATA 50204 |||| ||||| || Sbjct 164986 CATTGAAGAGGTA 164974 Score = 136 bits (150), Expect = 6e-27 Identities = 364/553 (66%), Gaps = 5/553 (1%) Strand=Plus/Minus Query 49656 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTC 49715 ||| || || | |||||||| || | ||||| || || || || || || |||||| | Sbjct 175381 CATGACACCAGTCTTTTGGTAGTCGGCGACACGCTTCTCAAAGAAGTTGGTCTTTCCTGC 175322 Query 49716 CAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCC 49775 || || || || |||||||| || || || ||||| | || || | || | | | Sbjct 175321 CAGGGAGATGTTCTCCATGAAGTCGAATGGGTTGGTCGCCTTGTAG-TACTTCTCGTTAC 175263 Query 49776 CAATTCAGAA-ATCAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAAT 49834 | | ||| | || || || ||||| || || || ||| ||||||| | | Sbjct 175262 CGAGGGAGAGTAGCAGCCTGTCGGCGACGAACTCAATGTATTGCTTCATCAAGTTGGCGT 175203 Query 49835 TCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCG 49894 |||| || | || | ||||| ||| |||| | || ||||| || ||||| || | Sbjct 175202 TCATGCCGAGCAGCGCACAGGGAAGTGCCTCAGTCAAGAACTCTTGCTCGATGGAGACAG 175143 Query 49895 CATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACA 49954 | || || || | | |||| | | || || | || | || || | Sbjct 175142 CCTCGGTAATGACGTCTTGGACGGCCTGCTTGCTTGGGCGGTGTCTAAGGTGGGAGAAGA 175083 Query 49955 TCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACG 50014 | || ||||| || ||| ||||||||||| | || || ||||| || || | Sbjct 175082 GGAGGCAGGCGAAGTCAGTGTGGAGACCCTCGTCACGGGAGATGAGCTCGTTCGAGAAGG 175023 Query 50015 TGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAA 50074 | || |||| ||| ||||||||||| || ||||| || ||||| || || || || || | Sbjct 175022 TCAGGCCGGCCATGAGGCCACGCTTCTTGAGCCAGAAAATGGAGGCGAAGGAGCCGGAGA 174963 Query 50075 AGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGG---CGCTGT 50131 ||||||| || || || ||||| |||||||| || | || | | ||| | ||| Sbjct 174962 AGAAGATACCCTCAACGGCGGCGAAGGCAACGAGGCGCTGAGCGAAGGTGGAATCCTTGT 174903 Query 50132 CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGG 50191 | || |||||| | ||||| ||||||||||| || | ||||| || || || |||| Sbjct 174902 CTTGGATCCACCTAACTGCCCAGTCGGCCTTCTTCTTAATGCAAGGAATGGTCTCGATGG 174843 Query 50192 CATTAAAGAGATA 50204 |||| ||||| || Sbjct 174842 CATTGAAGAGGTA 174830 >seq71 Length=14946 Score = 129 bits (142), Expect = 8e-25 Identities = 363/553 (66%), Gaps = 6/553 (1%) Strand=Plus/Plus Query 49656 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTC 49715 ||| || || | |||||||| || | ||||| || || || || || || |||||| | Sbjct 12205 CATGACACCAGTCTTTTGGTAGTCGGCGACACGCTTCTCAAAGAAGTTGGTCTTTCCTGC 12264 Query 49716 CAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCC 49775 || || || || |||||||| || || || ||||| | || || | || | | | Sbjct 12265 CAGGGAGATGTTCTCCATGAAGTCGAATGGGTTGGTCGCCTTGTAG-TACTTCTCGTTAC 12323 Query 49776 CAATTCAGAA-ATCAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAAT 49834 | | ||| | || || || ||||| || || || ||| ||||||| | | Sbjct 12324 CGAGGGAGAGTAGCAGCCTGTCGGCGACGAACTCAATGTATTGCTTCATCAAGTTGGCGT 12383 Query 49835 TCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCG 49894 |||| || | || | ||||| ||| |||| | || ||||| || ||||| || | Sbjct 12384 TCATGCCGAGCAGCGCACAGGGAAGTGCCTCAGTCAAGAACTCTTGCTCGATGGAGACAG 12443 Query 49895 CATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACA 49954 | || || || | | |||| | | || || | || | || || | Sbjct 12444 CCTCGGTAATGACGTCTTGGACGGCCTGCTTGCTTGGGCGGTGTCTAAGGTGGGAGAAGA 12503 Query 49955 TCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACG 50014 | || ||||| || ||| ||||||||||| | || || ||||| || || | Sbjct 12504 GGAGGCAGGCGAAGTCAGTGTGGAGACCCTCGTCACGGGAGATGAGCTCGTTCGAGAAGG 12563 Query 50015 TGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAA 50074 | || |||| ||| ||||||||||| || ||||| || ||||| || || || || || | Sbjct 12564 TCAGGCCGGCCATGAGGCCACGCTTCTTGAGCCAGAAAATGGAGGCGAAGGAGCCGGAGA 12623 Query 50075 AGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGG---CGCTGT 50131 ||||||| || || || | ||| |||||||| || | || | | ||| | ||| Sbjct 12624 AGAAGATACCCTCAAC-GGGGCGAAGGCAACGAGGCGCTGAGCGAAGGTGGAATCCTTGT 12682 Query 50132 CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGG 50191 | || |||||| | ||||| ||||||||||| || | ||||| || || || |||| Sbjct 12683 CTTGGATCCACCTAACTGCCCAGTCGGCCTTCTTCTTAATGCAAGGAATGGTCTCGATGG 12742 Query 50192 CATTAAAGAGATA 50204 |||| ||||| || Sbjct 12743 CATTGAAGAGGTA 12755 >seq25 Length=557695 Score = 116 bits (128), Expect = 5e-21 Identities = 177/249 (71%), Gaps = 5/249 (2%) Strand=Plus/Plus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTA-ATTAGTTCGTTGGAAAACGTGAG 50018 || ||||| || ||| || ||||||| | | | || || ||||| || || || || Sbjct 29556 CAGGCGAAGTCAGTGTGGAGGCCCTCGT-TATGGGATATGAGCTCGTTCGAGAAGGTCAG 29614 Query 50019 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAA 50078 || | ||| ||||||||||| || ||||| || || || || || || || || ||||| Sbjct 29615 ACCAGCCATGAGGCCACGCTTGTTGAGCCAGAAAATAGAGGCGAAGGAGCCGGAGAAGAA 29674 Query 50079 GATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGG---CGCTGTCATG 50135 ||| || || || || || |||||||| || | || || | | | | |||| || Sbjct 29675 GATACCCTCAACGGCAGCGAAGGCAACGAGACGCTGAGCAAAGGTAGAATCCTTGTCTTG 29734 Query 50136 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 50195 ||||||| | ||||| ||||||||||| || | ||||| || || || |||||||| Sbjct 29735 TATCCACCTAACTGCCCAGTCGGCCTTCTTCTTGATGCAAGGAATGGTCTCAATGGCATT 29794 Query 50196 AAAGAGATA 50204 ||||| || Sbjct 29795 GAAGAGGTA 29803 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718268054796120