Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20destructans_20[genbank_20GCA_5F001641265.1_202016 -05-10] 83 sequences; 35,818,201 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq19 91.5 3e-13 seq1 84.2 4e-11 >seq19 Length=888273 Score = 91.5 bits (100), Expect = 3e-13 Identities = 104/137 (76%), Gaps = 2/137 (1%) Strand=Plus/Plus Query 280702 CTCACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCA- 280760 ||||||| ||||| | ||||| || || |||||| ||||| | ||| ||| || Sbjct 215740 CTCACTCCCGCATGCTGGGTCTCTCCGGTGGCCAGCGTGTCAAGGTCGTCCTCGCCGCCT 215799 Query 280761 GCTCTGTGGCAACACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGC 280820 |||| |||||| | ||||| ||||||| ||||| |||||||||||||| |||||||| Sbjct 215800 GCTC-GTGGCAGCGTCCTCATTTGATCGTCCTCGATGAGCCTACCAACTACCTGGACCGT 215858 Query 280821 GAGAGCCTGGGCGCTCT 280837 || ||| || ||||| Sbjct 215859 GACTCCCTTGGTGCTCT 215875 >seq1 Length=2552699 Score = 84.2 bits (92), Expect = 4e-11 Identities = 127/178 (71%), Gaps = 2/178 (1%) Strand=Plus/Plus Query 280184 CAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCCAGGCCACTGA 280243 ||| ||||| || ||||| || || || || | ||||||||||||| ||| ||| | Sbjct 879702 CAACGGTGCCGGAAAGTCCACTCTCATTAAGCTTCTGACTGGCGAGA-CCATCCCAACCA 879760 Query 280244 GGGGTC-CGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGCACGCTTTCC 280302 |||| || |||||| |||||| |||| || | |||| || |||||||| || Sbjct 879761 CTGGTCGTGTCGAGAAGCACCCCAACTTGCGTATTGGTTACATCAAGCAGCACGCCCTCG 879820 Query 280303 ACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGGCGCTATGC 280360 | ||| | |||| || || || | ||| || ||||| ||| | |||||||| || || Sbjct 879821 AGCACGTGGAGATGCATCTCGAGAAGACCCCCAACCAGTACCTCCAGTGGCGTTACGC 879878 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027835706959803