Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20destructans_20[genbank_20GCA_5F001641265.1_202016 -05-10] 83 sequences; 35,818,201 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq20 102 6e-17 seq15 93.3 3e-14 >seq20 Length=799479 Score = 102 bits (112), Expect = 6e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||| ||| || || ||| || ||||| ||||| || || || | || | || ||| Sbjct 288550 ACCAGATGCAGGGTCGACTCCTTCTGAATGTTGTAGTCCGACAGGGTGCGGCCATCCTCC 288491 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | ||||||||| ||||| ||||| ||||| || |||| || | ||||| || || | Sbjct 288490 AGCTGCTTACCAGCAAAGATCAGGCGCTGCTGGTCCGGAGGGATACCCTCTTTATCTTGA 288431 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| || || | | | | || || | |||||||| | ||||||||| || Sbjct 288430 ATCTTCGACTTGACGTTATCAATGGTATCGGATGATTCCACCTCAAGCGTAATCGTCTTG 288371 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| | ||| || |||||||||||||| Sbjct 288370 CCCGTAAGAGTCTTGACAAAAATCTGCAT 288342 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | |||||| || ||||||||||| || || || ||||| || || | | Sbjct 289015 AGGCGGAGCACCAAGTGAAGCGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGCGTCCTC 288956 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| ||||||||| ||||| ||||| ||||| || |||| || | |||||| Sbjct 288955 CCATCCTCCAGCTGCTTACCAGCAAAGATCAGGCGCTGCTGGTCCGGTGGGATACCCTCC 288896 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || || |||||| || || | | | || || | ||| ||||| | ||| Sbjct 288895 TTATCCTGAATCTTGGACTTGACGTTGTCAATGGTGTCCGAAGACTCAACCTCGAGAGTA 288836 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || ||||| ||||| || || || ||||||||||| Sbjct 288835 ATGGTCTTTCCAGTCAAGGTCTTGACGAAAATCTGCAT 288798 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || || ||| || ||||| ||||| || || || | || |||| || Sbjct 288322 ACCAAGTGAAGAGTCGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCA 288263 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | ||||||||| || || ||||| ||||| || |||| |||| |||||||||||| Sbjct 288262 AGCTGCTTACCAGCGAAAATCAGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGG 288203 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 || || || ||| | | | || |||| ||| ||||||| || || || || Sbjct 288202 ATTTTCGACTTCACATTGTCGATGGTGTCGGACGACTCAACCTCCAAAGTGATGGTCTTG 288143 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || | || || || || |||||||| Sbjct 288142 CCAGTGAGGGTCTTGACGAAGATCTGCAT 288114 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 48563 ATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTG 48622 ||||||||| ||| || || || ||||||||||| || | || | || || | ||| Sbjct 288773 ATGTAGCGTCGACTCCTTCTGGATGTTGTAATCAGACAGGGTGCGGCCATCCTCGAGCTG 288714 Query 48623 CTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTT 48682 ||| || || || ||||| ||||| || |||| || | |||||||| || ||||| Sbjct 288713 CTTGCCCGCGAAAATCAGGCGCTGCTGGTCCGGAGGGATACCCTCCTTATCTTGGATCTT 288654 Query 48683 TTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGT 48742 || || | | | | || |||| ||| || |||| |||||| || ||||| || Sbjct 288653 AGACTTGACGTTATCGATGGTATCCGACGACTCGACTTCCAGCGTAATTGTCTTTCCAGT 288594 Query 48743 CAAAGTTTTTACAAAAATCTGCAT 48766 | ||| || || || || ||||| Sbjct 288593 GAGAGTCTTGACGAAGATTTGCAT 288570 >seq15 Length=1123021 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || ||| ||| || || || ||||| || || || | || |||| || Sbjct 653293 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCG 653234 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | |||||| || || || ||||| ||||| || |||| ||||| ||||||||||| Sbjct 653233 AGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTGG 653174 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| || ||| | | || || |||| ||||||||| | || || || || Sbjct 653173 ATCTTGGACTTGACATTGTCGATAGTGTCGGACGACTCCACCTCAAGGGTGATAGTCTTG 653114 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||||| || || || || || ||||| Sbjct 653113 CCCGTCAGGGTCTTCACGAAGATTTGCAT 653085 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380937214657809