Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20destructans_20[genbank_20GCA_5F001641265.1_202016 -05-10] 83 sequences; 35,818,201 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq20 120 6e-22 seq4 89.7 1e-12 >seq20 Length=799479 Score = 120 bits (132), Expect = 6e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| ||||| | ||||| || || || ||||| || || || || | Sbjct 288570 TACCACCACGAAGACGGAGAACCAGATGCAGGGTCGACTCCTTCTGAATGTTGTAGTCCG 288511 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | || || || || || || ||||||||||| || | || || || |||| Sbjct 288510 ACAGGGTGCGGCCATCCTCCAGCTGCTTACCAGCAAAGATCAGGCGCTGCTGGTCCGGAG 288451 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || || |||||||||||||| | || || || ||||| ||||| | ||| | Sbjct 288450 GGATACCCTCTTTATCTTGAATCTTCGACTTGACGTTATCAATGGTATCGGATGATTCCA 288391 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || | || ||||||||||| || | ||||| ||||| |||||||| Sbjct 288390 CCTCAAGCGTAATCGTCTTGCCCGTAAGAGTCTTGACAAAAATCTGCAT 288342 Score = 95.1 bits (104), Expect = 2e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || ||||| || || || ||||| || || || || || | || || Sbjct 289012 CGGAGCACCAAGTGAAGCGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGCGTCCTCCCA 288953 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || || || ||||||||||| || | || || || || || || || |||||| Sbjct 288952 TCCTCCAGCTGCTTACCAGCAAAGATCAGGCGCTGCTGGTCCGGTGGGATACCCTCCTTA 288893 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || |||||||| | || || || ||||| || || || || || || | ||| || Sbjct 288892 TCCTGAATCTTGGACTTGACGTTGTCAATGGTGTCCGAAGACTCAACCTCGAGAGTAATG 288833 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || ||||| ||||| || || |||||||| Sbjct 288832 GTCTTTCCAGTCAAGGTCTTGACGAAAATCTGCAT 288798 Score = 91.5 bits (100), Expect = 3e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || ||||| | || || || || || ||||| || || |||||||| || | | || Sbjct 288784 CGGAGAACAAGATGTAGCGTCGACTCCTTCTGGATGTTGTAATCAGACAGGGTGCGGCCA 288725 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || || || || || || || || | || || || ||||| || || |||||| Sbjct 288724 TCCTCGAGCTGCTTGCCCGCGAAAATCAGGCGCTGCTGGTCCGGAGGGATACCCTCCTTA 288665 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 ||||| ||||| | || || || || || ||||| | || ||||||| || || Sbjct 288664 TCTTGGATCTTAGACTTGACGTTATCGATGGTATCCGACGACTCGACTTCCAGCGTAATT 288605 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || || | ||||| || || || ||||| Sbjct 288604 GTCTTTCCAGTGAGAGTCTTGACGAAGATTTGCAT 288570 >seq4 Length=1854919 Score = 89.7 bits (98), Expect = 1e-12 Identities = 127/179 (71%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 82623 TTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATT 82682 ||||| || || || || || ||| | | || || || || || || ||||||||||| Sbjct 704161 TTCTGGATGTTGTAGTCGGAAAGAGTGCGTCCATCCTCGAGCTGCTTGCCAGCAAAGATC 704102 Query 82683 AGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCA 82742 || | || || || || || ||||| ||||| ||||| ||||| | || ||||| || Sbjct 704101 AGGCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCTTGGATCTTCGACTTGACATTGTCG 704042 Query 82743 ATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAA 82801 || ||||| | || || || | || || |||||||| ||||| ||||| || || Sbjct 704041 ATAGTATCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAAGGTCTTGACGAA 703983 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981826155888137