Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20destructans_20[genbank_20GCA_5F001641265.1_202016 -05-10] 83 sequences; 35,818,201 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq28 188 1e-42 seq3 107 3e-18 seq71 100 4e-16 >seq28 Length=369090 Score = 188 bits (208), Expect = 1e-42 Identities = 409/612 (67%), Gaps = 0/612 (0%) Strand=Plus/Plus Query 77925 TCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGAC 77984 ||||| ||||| || | || || |||||||||||||||| || |||||||| | | | Sbjct 126975 TCAAACTCATCGCCGTAGACGTCCGCCAATCCAGGGCATTCGTTGGGGCACATGAGAGTC 127034 Query 77985 CAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAAT 78044 ||| | || | | || ||| || ||||| |||||||| || ||||| ||||| ||| Sbjct 127035 CAGGCGCCGTTCTTCTCAACACGCTTCATGAAGAGATCCGGGATCCAGAGAGCGTAGAAT 127094 Query 78045 AGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATA 78104 || || |||| | ||| || || || |||||| | | || || ||||| | Sbjct 127095 AGGTCACGGGCACGGACTTCCTCCTTGCCGTGGTTCTTTCTCAAGTCCAGGAACTCAAAG 127154 Query 78105 ATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCC 78164 | ||| | ||||||||| || | || || || | | | || ||||| || ||||| ||| Sbjct 127155 ACATCCGCATGCCATGGCTCAACGTAGATGGCGAAAGCACCGGGTCGCTTGTTACCACCC 127214 Query 78165 TGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGAT 78224 || || | || || |||||||| || | || | | ||| |||| |||||||| || Sbjct 127215 TGGTCAACGTACCTCGCGGTGTTGTTGAAGACGCGGAGCATGGGAACGATACCGTTCGAG 127274 Query 78225 GTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGATATCCCT 78284 ||||||| || || | ||| || ||| | || || ||| | ||| || || Sbjct 127275 TTTCCATTGGTACCGGCAATGTATGCACCAGTGGCACGGATACGATGGATGTTTAATCCG 127334 Query 78285 ATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCT 78344 || ||||| || |||| || || | || || || | || || ||||||||||| Sbjct 127335 ATACCTCCAGCAGTCTTTGAGATCATGGCACATGTCTTGAGCGTGTCATAGATACCCTCA 127394 Query 78345 ATACTGTCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCT 78404 ||||| || ||| |||||| | | || ||| |||| || || || || Sbjct 127395 ATACTATCCTCCTTCATGTCGACCAAGAAGCAGGATGACAGCTGGGCCTGTGGTGTACCA 127454 Query 78405 GCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGTATGTT 78464 ||||| || | ||| || || || || || || |||| ||| | || |||||||| Sbjct 127455 GCATTGAAGAGTGTTGGGGAAGCGTGTGTGAAGTATTTGGAAGACATGAGGTTGTATGTC 127514 Query 78465 TCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAACATATGC 78524 || | | || || ||| ||||| || ||||| |||||||| | ||| ||| Sbjct 127515 TCGGTTGTCTTCTCAATATCCTCGCCGTGAATGCCCACCGCAACACGCATAATCATGTGC 127574 Query 78525 TGAGGTCTTTCA 78536 || ||||| ||| Sbjct 127575 TGTGGTCTCTCA 127586 >seq3 Length=1861714 Score = 107 bits (118), Expect = 3e-18 Identities = 336/517 (65%), Gaps = 10/517 (2%) Strand=Plus/Minus Query 48183 TCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCG 48242 ||||| || || || || |||| ||| || ||||| || |||||||| || || | ||| Sbjct 165179 TCGTTCGAGAAGGTCAGGCCGGCCATGAGGCCACGCTTCTTGAGCCAGAAAATGGAGGCG 165120 Query 48243 AAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAA 48302 || || || || ||||| || || || ||||| || || || || | || || | Sbjct 165119 AAGGAGCCGGAGAAGAAGATACCCTCAACGGCGGCGAAGGCAACGAGGCGCTGAGCGAAG 165060 Query 48303 CTGGCTTCGTTGTGT---ATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGC 48359 ||| || |||| | ||||||| |||||| || ||||||||||| | ||||| Sbjct 165059 GTGGAATCCTTGTCTTGGATCCACCTAACTGCCCAGTCGGCCTTCTTCTTAATGCAAGGA 165000 Query 48360 ATTGTTTCTATAGCATTAAAGAGAAAGtttttttCA--TTGCTATCTTTAACGTAAGTAT 48417 || || || || ||||| ||||| | | || | ||| || || | ||| || | Sbjct 164999 ATGGTCTCGATGGCATTGAAGAGGTATGTGCGTTGAGCTTG--TTCCTTGATGTATGTGT 164942 Query 48418 CTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAA 48477 | || | || || | |||| |||||| || || || || || || ||||| | Sbjct 164941 CGATGAGGAGGGAGTATGTCTCGGCGTGAATGTTCTCTATCATGATTTGGAAACCGTAGA 164882 Query 48478 AACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTA 48537 | || | ||||||| ||| || ||||| | | || || || | |||||| || | Sbjct 164881 AGCAGCGGGCTTCTGGGATTTGGACCTCGCTGCTGAAGCGCTCGAGGAGATTCTCGTTGA 164822 Query 48538 CTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGG 48597 | ||||| || || || || || || | || || ||| || || || | | Sbjct 164821 CAATTCCGTCTGACGCGGCGAAGAAAGCGAGAACGTGGGAAATGAAGTAACGCTCATCGT 164762 Query 48598 AAGTCA---GTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCC 48654 | | | | || |||||||| | | || || || | ||| | || || || |||| Sbjct 164761 CATTGAGGCGGTTGTTCCAGTCGTGAAGGTCCTTGGAGAGATCAATCTCCTCTGCCGTCC 164702 Query 48655 AAAATGATGCCTCTGCTTTTTTATACATATTCCATAT 48691 | || || || ||||| || || ||||| | ||| || Sbjct 164701 AGAAAGACGCTTCTGCCTTCTTGTACATCTGCCAGAT 164665 Score = 107 bits (118), Expect = 3e-18 Identities = 336/517 (65%), Gaps = 10/517 (2%) Strand=Plus/Minus Query 48183 TCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCG 48242 ||||| || || || || |||| ||| || ||||| || |||||||| || || | ||| Sbjct 175035 TCGTTCGAGAAGGTCAGGCCGGCCATGAGGCCACGCTTCTTGAGCCAGAAAATGGAGGCG 174976 Query 48243 AAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAA 48302 || || || || ||||| || || || ||||| || || || || | || || | Sbjct 174975 AAGGAGCCGGAGAAGAAGATACCCTCAACGGCGGCGAAGGCAACGAGGCGCTGAGCGAAG 174916 Query 48303 CTGGCTTCGTTGTGT---ATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGC 48359 ||| || |||| | ||||||| |||||| || ||||||||||| | ||||| Sbjct 174915 GTGGAATCCTTGTCTTGGATCCACCTAACTGCCCAGTCGGCCTTCTTCTTAATGCAAGGA 174856 Query 48360 ATTGTTTCTATAGCATTAAAGAGAAAGtttttttCA--TTGCTATCTTTAACGTAAGTAT 48417 || || || || ||||| ||||| | | || | ||| || || | ||| || | Sbjct 174855 ATGGTCTCGATGGCATTGAAGAGGTATGTGCGTTGAGCTTG--TTCCTTGATGTATGTGT 174798 Query 48418 CTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAA 48477 | || | || || | |||| |||||| || || || || || || ||||| | Sbjct 174797 CGATGAGGAGGGAGTATGTCTCGGCGTGAATGTTCTCTATCATGATTTGGAAACCGTAGA 174738 Query 48478 AACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTA 48537 | || | ||||||| ||| || ||||| | | || || || | |||||| || | Sbjct 174737 AGCAGCGGGCTTCTGGGATTTGGACCTCGCTGCTGAAGCGCTCGAGGAGATTCTCGTTGA 174678 Query 48538 CTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGG 48597 | ||||| || || || || || || | || || ||| || || || | | Sbjct 174677 CAATTCCGTCTGACGCGGCGAAGAAAGCGAGAACGTGGGAAATGAAGTAACGCTCATCGT 174618 Query 48598 AAGTCA---GTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCC 48654 | | | | || |||||||| | | || || || | ||| | || || || |||| Sbjct 174617 CATTGAGGCGGTTGTTCCAGTCGTGAAGGTCCTTGGAGAGATCAATCTCCTCTGCCGTCC 174558 Query 48655 AAAATGATGCCTCTGCTTTTTTATACATATTCCATAT 48691 | || || || ||||| || || ||||| | ||| || Sbjct 174557 AGAAAGACGCTTCTGCCTTCTTGTACATCTGCCAGAT 174521 >seq71 Length=14946 Score = 100 bits (110), Expect = 4e-16 Identities = 335/517 (65%), Gaps = 11/517 (2%) Strand=Plus/Plus Query 48183 TCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCG 48242 ||||| || || || || |||| ||| || ||||| || |||||||| || || | ||| Sbjct 12551 TCGTTCGAGAAGGTCAGGCCGGCCATGAGGCCACGCTTCTTGAGCCAGAAAATGGAGGCG 12610 Query 48243 AAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAA 48302 || || || || ||||| || || || |||| || || || || | || || | Sbjct 12611 AAGGAGCCGGAGAAGAAGATACCCTCAACGGG-GCGAAGGCAACGAGGCGCTGAGCGAAG 12669 Query 48303 CTGGCTTCGTTGTGT---ATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGC 48359 ||| || |||| | ||||||| |||||| || ||||||||||| | ||||| Sbjct 12670 GTGGAATCCTTGTCTTGGATCCACCTAACTGCCCAGTCGGCCTTCTTCTTAATGCAAGGA 12729 Query 48360 ATTGTTTCTATAGCATTAAAGAGAAAGtttttttCA--TTGCTATCTTTAACGTAAGTAT 48417 || || || || ||||| ||||| | | || | ||| || || | ||| || | Sbjct 12730 ATGGTCTCGATGGCATTGAAGAGGTATGTGCGTTGAGCTTG--TTCCTTGATGTATGTGT 12787 Query 48418 CTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAA 48477 | || | || || | |||| |||||| || || || || || || ||||| | Sbjct 12788 CGATGAGGAGGGAGTATGTCTCGGCGTGAATGTTCTCTATCATGATTTGGAAACCGTAGA 12847 Query 48478 AACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTA 48537 | || | ||||||| ||| || ||||| | | || || || | |||||| || | Sbjct 12848 AGCAGCGGGCTTCTGGGATTTGGACCTCGCTGCTGAAGCGCTCGAGGAGATTCTCGTTGA 12907 Query 48538 CTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGG 48597 | ||||| || || || || || || | || || ||| || || || | | Sbjct 12908 CAATTCCGTCTGACGCGGCGAAGAAAGCGAGAACGTGGGAAATGAAGTAACGCTCATCGT 12967 Query 48598 AAGTCA---GTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCC 48654 | | | | || |||||||| | | || || || | ||| | || || || |||| Sbjct 12968 CATTGAGGCGGTTGTTCCAGTCGTGAAGGTCCTTGGAGAGATCAATCTCCTCTGCCGTCC 13027 Query 48655 AAAATGATGCCTCTGCTTTTTTATACATATTCCATAT 48691 | || || || ||||| || || ||||| | ||| || Sbjct 13028 AGAAAGACGCTTCTGCCTTCTTGTACATCTGCCAGAT 13064 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694668079281120