Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20pannorum_20var._20pannorum_20[genbank_20GCA_5F001 630605.1_202016-04-25] 599 sequences; 30,534,672 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq450 129 6e-25 seq482 98.7 1e-15 >seq450 Length=136939 Score = 129 bits (142), Expect = 6e-25 Identities = 148/194 (76%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| ||||| |||||||| | ||||| || |||| || ||||||||||||||||| Sbjct 111051 CTCCTTCTGAATGTTGTAATCGGAGAGAGTGCGGCCGTCCTCAAGCTGCTTACCAGCGAA 110992 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 42135 || || ||||||||||| | || | || |||||||||| ||| | || | |||| || Sbjct 110991 AATCAGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCC-TGAATCTTGGACTTGA-CG 110934 Query 42136 TCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTT 42194 | | | | |||||| ||| || || || | |||||||| ||||| || || ||||| Sbjct 110933 TTGTCGATGGTGTCGGACGACTCAACCTCCAAAGTGATGGTCTTGCCAGTGAGGGTCTTA 110874 Query 42195 ACAAAGATTTGCAT 42208 || ||||| ||||| Sbjct 110873 ACGAAGATCTGCAT 110860 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 42005 ATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTG 42064 ||| || ||| |||||| ||||| |||||||||| |||||| || | || |||||||| Sbjct 111519 ATGTAAAGTGGACTCCTTCTGAATGTTGTAATCAGACAGAGTACGGCCATCCTCTAGCTG 111460 Query 42065 CTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTT 42124 ||| || || || || || ||||||||||| | ||| | || |||||| || ||| || Sbjct 111459 CTTGCCCGCAAAAATTAGGCGCTGCTGGTCCGGTGGGATGCCCTCCTTATCTTGGATCTT 111400 Query 42125 TTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGT 42184 |||| | | | || || ||| || || || | ||| || || || || || Sbjct 111399 AGACTTGACGTTATCGATGGTATCCGACGACTCGACCTCCAACGTAATTGTCTTTCCGGT 111340 Query 42185 TAGCGTCTTTACAAAGATTTGCAT 42208 || ||||| || ||||||||||| Sbjct 111339 GAGAGTCTTGACGAAGATTTGCAT 111316 Score = 105 bits (116), Expect = 7e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 |||||||||| ||| |||||| ||||| ||||| || | || || || | || || Sbjct 111296 ACCAAATGCAGAGTGGACTCCTTCTGAATGTTGTAGTCCGACAAGGTGCGGCCATCCTCC 111237 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 | |||||| || ||||| || || ||||||||||| | || | | |||||||| | || Sbjct 111236 AACTGCTTGCCTGCGAAAATCAGGCGCTGCTGGTCCGGAGGAATACCCTCCTTGT-CTTG 111178 Query 42120 ATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 42178 | | || | | | | | | | | || ||| |||||||| |||| ||| || || || Sbjct 111177 AATCTTGCTCTTAACATTGTCGATAGTATCGGATGATTCCACCTCGAGCGTAATCGTCTT 111118 Query 42179 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||||| || ||||| ||||| || ||||| Sbjct 111117 GCCCGTAAGAGTCTTGACAAAAATCTGCAT 111088 Score = 95.1 bits (104), Expect = 1e-14 Identities = 155/218 (71%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||| | |||||| || | ||||||||||| || || ||||| || ||| |||| | Sbjct 111759 ACGGAGCACCAAGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGCGTCCTTCC 111700 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || || || ||||||||||| || || || ||||||||||| | ||| | | |||||| Sbjct 111699 ATCCTCGAGTTGCTTACCAGCAAAGATCAGGCGCTGCTGGTCCGGTGGGATACCCTCCTT 111640 Query 42113 GTCCATGATTTTTTG-TTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTG 42170 ||| ||| | || | |||| ||| | | | ||||| || || || |||| || Sbjct 111639 ATCC-TGAATCTTGGACTTGA-CGTTGTCAATGGTGTCCGAAGACTCAACCTCGAGAGTA 111582 Query 42171 ATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || || ||||| || ||||| || || || ||||| Sbjct 111581 ATAGTCTTTCCCGTCAGGGTCTTGACGAAAATCTGCAT 111544 >seq482 Length=177890 Score = 98.7 bits (108), Expect = 1e-15 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 ||||| || | ||| |||||| || || ||||| || | || || || | || || Sbjct 107143 ACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCATCCTCG 107084 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 |||||||| || ||||| || | ||||||||||| | || | | |||||||||| | Sbjct 107083 AGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTGG 107024 Query 42120 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 42179 || || |||| | | | |||||| || ||||| || | ||||| || ||| Sbjct 107023 ATCTTGGACTTGACATTGTCGATAGTGTCGGATGACTCCACCTCAAGGGTGATAGTCTTG 106964 Query 42180 CCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||||| || ||||| || ||||||||||| Sbjct 106963 CCCGTCAGGGTCTTCACGAAGATTTGCAT 106935 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543208732694160