Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20pannorum_20var._20pannorum_20[genbank_20GCA_5F001 630605.1_202016-04-25] 599 sequences; 30,534,672 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq482 141 2e-28 seq450 132 1e-25 seq534 84.2 5e-11 >seq482 Length=177890 Score = 141 bits (156), Expect = 2e-28 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || ||||||||||| | ||| ||||| |||||||| |||| ||||||||| | | || Sbjct 107155 CGGAGTCTCAGGACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTG 107096 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| || |||||||| ||||||||||| | |||||||||||||| |||||| Sbjct 107095 CGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGGGGAATTCCC 107036 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||| || |||| ||||| | || || || || | Sbjct 107035 TCCTTGTCCTGGATCTTGGACTTGACATTGTCGATAGTGTCGGATGACTCCACCTCAAGG 106976 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| ||||| || || ||||| || ||||| Sbjct 106975 GTGATAGTCTTGCCCGTCAGGGTCTTCACGAAGATTTG 106938 >seq450 Length=136939 Score = 132 bits (146), Expect = 1e-25 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | ||||| | ||| |||||||||||||| || | |||||| || | | ||| Sbjct 111080 CGAAGACGAAGGACCAAGTGAAGAGTCGACTCCTTCTGAATGTTGTAATCGGAGAGAGTG 111021 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || || |||||||| || ||||| || || ||||||||||||||| ||| || Sbjct 111020 CGGCCGTCCTCAAGCTGCTTACCAGCGAAAATCAGGCGCTGCTGGTCCGGAGGAATGCCC 110961 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||||||||| ||| ||| |||| |||||| | | || || ||||| Sbjct 110960 TCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGACGACTCAACCTCCAAA 110901 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || ||||| || || || || || || Sbjct 110900 GTGATGGTCTTGCCAGTGAGGGTCTTAACGAAGATCTG 110863 Score = 132 bits (146), Expect = 1e-25 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || | || ||||| |||||||| || | ||||||||| | ||| || Sbjct 111308 CGAAGACGGAGAACCAAATGCAGAGTGGACTCCTTCTGAATGTTGTAGTCCGACAAGGTG 111249 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| |||| |||||| || ||||| || || ||||||||||||||| ||| || Sbjct 111248 CGGCCATCCTCCAACTGCTTGCCTGCGAAAATCAGGCGCTGCTGGTCCGGAGGAATACCC 111189 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || |||||||| ||| || |||| || || | || ||| || || | | Sbjct 111188 TCCTTGTCTTGAATCTTGCTCTTAACATTGTCGATAGTATCGGATGATTCCACCTCGAGC 111129 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || |||||||| ||||| ||||| || |||||||| || Sbjct 111128 GTAATCGTCTTGCCCGTAAGAGTCTTGACAAAAATCTG 111091 Score = 116 bits (128), Expect = 9e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || ||||| || | ||| |||||||| || | |||||| |||| || ||| | ||||| Sbjct 111527 AGAACAAGATGTAAAGTGGACTCCTTCTGAATGTTGTAATCAGACAGAGTACGGCCATCC 111468 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| || || || || || |||||||||||||| || || || || Sbjct 111467 TCTAGCTGCTTGCCCGCAAAAATTAGGCGCTGCTGGTCCGGTGGGATGCCCTCCTTATCT 111408 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| ||| |||| ||| || | | || || |||||||| || ||| Sbjct 111407 TGGATCTTAGACTTGACGTTATCGATGGTATCCGACGACTCGACCTCCAACGTAATTGTC 111348 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || |||||||| || || || ||||| Sbjct 111347 TTTCCGGTGAGAGTCTTGACGAAGATTTG 111319 Score = 109 bits (120), Expect = 1e-18 Identities = 137/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | ||||||||| |||||||| |||| ||||||||| | | || | || || Sbjct 110843 AGGACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCC 110784 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || || ||||| ||||||||||| ||||| ||||||||||| |||||| || || Sbjct 110783 TCAAGTTGCTTGCCGGCGAAGATCAGACGTTGCTGGTCCGGGGGAATTCCCTCCTTGTCT 110724 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| ||| ||| |||| ||| || | | || || || | ||||| ||| Sbjct 110723 TGAATCTTGCTCTTAACGTTGTCGATGGTATCGGAGGACTCGACCTCAAGGGTGATGGTC 110664 Query 199598 TTACCCGT 199605 || || || Sbjct 110663 TTGCCAGT 110656 Score = 105 bits (116), Expect = 2e-17 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || | ||| || || |||||| |||| ||||||||| || ||| Sbjct 111764 CGAAGACGGAGCACCAAGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGCGTC 111705 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 |||||||| || || ||||| || || ||||| || |||||||||||||| || || Sbjct 111704 CTTCCATCCTCGAGTTGCTTACCAGCAAAGATCAGGCGCTGCTGGTCCGGTGGGATACCC 111645 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||||||||| ||| ||| || | |||||| | | || || || | Sbjct 111644 TCCTTATCCTGAATCTTGGACTTGACGTTGTCAATGGTGTCCGAAGACTCAACCTCGAGA 111585 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| ||||| || || || || ||||| || Sbjct 111584 GTAATAGTCTTTCCCGTCAGGGTCTTGACGAAAATCTG 111547 >seq534 Length=453533 Score = 84.2 bits (92), Expect = 5e-11 Identities = 118/166 (71%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 199440 CCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGA 199499 |||| |||| ||||||||| | | || | |||||| || |||||||| || || |||| Sbjct 392642 CCTTCTGGATGTTGTAGTCGGAAAGGGTGCGTCCATCCTCGAGCTGCTTGCCAGCAAAGA 392701 Query 199500 TGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATT 199559 | || ||||||||||||||| |||||| || || || ||||| ||| || | Sbjct 392702 TCAGGCGCTGCTGGTCCGGAGGAATTCCCTCCTTGTCTTGGATCTTCGACTTGACATTGT 392761 Query 199560 CGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGT 199605 ||| || || | | || || || | ||||| ||||| ||||| Sbjct 392762 CGATAGTATCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGT 392807 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178912552145133