Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20pannorum_20var._20pannorum_20[genbank_20GCA_5F001 630605.1_202016-04-25] 599 sequences; 30,534,672 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq529 253 2e-62 seq450 122 9e-23 seq482 118 1e-21 seq534 102 8e-17 >seq529 Length=148573 Score = 253 bits (280), Expect = 2e-62 Identities = 580/863 (67%), Gaps = 25/863 (3%) Strand=Plus/Plus Query 132591 CATCACGCCAAATTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTC 132650 ||| || ||| ||||| || ||||| || ||||| || || ||||| || || | Sbjct 106581 CATGACACCAGTCTTTTGGTAGTCGCCGACGCGCTTCTCGAAGAAGTTAGTCTTACCGGC 106640 Query 132651 CAAGGAAATGAGCGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTT---GGTGCC 132707 || ||| ||| | ||| || || || |||||||| | |||||| ||| | |||| Sbjct 106641 CAGGGAGATGTTCTCCATGAAGTCGAATGGGTTGGCCGATTTGTAGAACTTCTCGTTGCC 106700 Query 132708 GATCAGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCA 132767 || || || |||||||||||||| |||||||| ||||||||| ||| | | Sbjct 106701 GAG-AGAAAGA--AGCAGCCTGTCGGCGACGAACTCAATGTATTGCTTCATCAAGTTGGC 106757 Query 132768 ATTAAGTCCCAGCAGACGCAC-CGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGA 132826 || | || ||||| ||||| || || || ||||| || || |||||| ||| | Sbjct 106758 GTTCATGCCGAGCAG-CGCACAGGGAAGTGCCTCGGTCAGGAACTCTTGCTCAATGCTAA 106816 Query 132827 CCGCGTCGGTGACGATTTCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGA 132886 | || ||||| | || || ||| | | ||| || || || | || || Sbjct 106817 CAGCCTCGGTAATGACGTCTTGGACGGCCTGCTTGCTTGGGCGGTGTTTAAGGTGAGAGA 106876 Query 132887 ACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGA 132946 | | | ||| || ||||| || | |||||||| | ||||||||| ||||| || Sbjct 106877 AGAGGAGGCAGGCGAAGTCAGTGTGGAGACCCTCGTCGCGGGAAATGAGCTCGTTAGAGA 106936 Query 132947 AAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCG 133006 | || | ||| | ||||||||| || || || ||||| || |||| ||||| ||| | Sbjct 106937 AGGTAAGGCCAGCCATGAGGCCACGCTTCTTAAGCCAGAAAATGGATGCGAAGGAGCCAG 106996 Query 133007 AAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTT 133066 | ||||| | ||||| ||||| ||||| || || || |||| | |||| || | || | Sbjct 106997 AGAAGAAAATACCCTCAACGGCAGCGAAGGCAACGAGACGCTGGGCGAAGGTAGAATCCT 107056 Query 133067 TG-CTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCG 133125 || || | |||||| | | ||||| |||||||| | |||| ||| || || || ||| Sbjct 107057 TGTCTTG-GATCCACCTGACAGCCCAATCGGCCTTCTTCTTGATGCAAGGAATGGTCTCG 107115 Query 133126 ATGGCGTTCAACA---AACGGAGTTTCTCT---TCCGAGGAACGCACGTAGGTGTCGATG 133179 ||||| || || | | | ||| || ||| | | ||| ||||| ||| Sbjct 107116 ATGGCATTGAAGAGGTATGTGCGTTGAGCTTGCTCCTTG------ATGTATGTGTCAATG 107169 Query 133180 AGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCAC 133239 ||| || || | || | ||| | |||||| || ||||| || ||||| ||||| Sbjct 107170 AGGAGGGAGTATGTCTCGGCGTGAATGTTCTCGATCATAATTTGGAAACCGTAGAAGCAG 107229 Query 133240 CGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATG 133299 || || || | || || || ||| ||||||| || || |||||||| || Sbjct 107230 CGGGCTTCTGGGATTTGGACCTCGCTGCTGAAGCGCTCGAGGAGGTTCTCGTTGACAATT 107289 Query 133300 CCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTC 133359 ||||| |||||||| || || || ||||| |||||| | |||||| | |||||| Sbjct 107290 CCGTCCGACGCGGCGAAGAAAGCGAGAACGTGGGAGATGAAGTAGCGCTCATCGTCGTTG 107349 Query 133360 AAGCG---CTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAAC 133416 | ||| | ||||||| | ||||||||| || || | |||||| | ||||| || Sbjct 107350 AGGCGGTTGTTCCAGTCGTGGAGGTCCTTGGAGAGATCAATCTCCTCTGCTGTCCAGAAA 107409 Query 133417 GACGCCTCGGCTTTTTTGTACAT 133439 || ||||| || || |||||||| Sbjct 107410 GAGGCCTCCGCCTTCTTGTACAT 107432 >seq450 Length=136939 Score = 122 bits (134), Expect = 9e-23 Identities = 151/204 (74%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 38268 ACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAAGA 38326 || ||||| ||||||||| | || |||||| || |||| | | | | |||| | | || Sbjct 110656 ACTGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGATACCATCGACAACGTTAAGAGC 110715 Query 38327 AAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAA 38386 || | || ||||| |||||||||||| | ||||| || || || || | ||| ||||| Sbjct 110716 AAGATTCAA-GACAAGGAGGGAATTCCCCCGGACCAGCAACGTCTGATCTTCGCCGGCAA 110774 Query 38387 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCA 38446 || || || |||| ||||||||| ||||||||||||||| ||||| | || || || Sbjct 110775 GCAACTTGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCCACTCTCCA 110834 Query 38447 TTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| || ||| || | || || Sbjct 110835 CTTGGTCCTCCGTCTGCGTGGTGG 110858 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || |||||||| || || || |||| || || | || Sbjct 111088 ATGCAGATTTTTGTCAAGACTCTTACGGGCAAGACGATTACGCTCGAGGTGGAATCATCC 111147 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | |||| || || | ||||| ||||| ||||| | ||||| Sbjct 111148 GATACTATCGACAATGTTAAGAGCAAGATTCAAGACAAGGAGGGTATTCCTCCGGACCAG 111207 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || |||| ||| ||||| ||| |||| || | |||||| | ||||||||| Sbjct 111208 CAGCGCCTGATTTTCGCAGGCAAGCAGTTGGAGGATGGCCGCACCTTGTCGGACTACAAC 111267 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 || || ||||| | || ||||||||||| || ||| Sbjct 111268 ATTCAGAAGGAGTCCACTCTGCATTTGGTTCTCCGT 111303 >seq482 Length=177890 Score = 118 bits (130), Expect = 1e-21 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || || |||||||| || |||||| | || || ||| | || Sbjct 106935 ATGCAAATCTTCGTGAAGACCCTGACGGGCAAGACTATCACCCTTGAGGTGGAGTCATCC 106994 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | || || |||| ||||| |||||||||||| | ||||| Sbjct 106995 GACACTATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGACCAG 107054 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| | || | ||| ||||| ||||| || || | |||||||| ||||||||| Sbjct 107055 CAGCGCTTGATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTTTCGGACTACAAC 107114 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456 ||||| ||||| | || || || ||||| ||| Sbjct 107115 ATCCAGAAGGAGTCCACTCTTCACTTGGTCCTG 107147 >seq534 Length=453533 Score = 102 bits (112), Expect = 8e-17 Identities = 131/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 ||||| || || | |||||||| ||||||||| | || |||||| || |||| | | Sbjct 392822 TTCGTCAAGACCTTGACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGATACTATC 392763 Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372 | | | || || |||| ||||| ||||||||||| | ||||| ||||| || Sbjct 392762 GACAATGTCAAGTCGAAGATCCAAGACAAGGAGGGAATTCCTCCGGACCAGCAGCGCCTG 392703 Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432 || | || ||||| ||||| || || | |||||||| ||||||||||||||| ||| Sbjct 392702 ATCTTTGCTGGCAAGCAGCTCGAGGATGGACGCACCCTTTCCGACTACAACATCCAGAAG 392643 Query 38433 G 38433 | Sbjct 392642 G 392642 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500169054956160