Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20pannorum_20var._20pannorum_20[genbank_20GCA_5F001 630605.1_202016-04-25] 599 sequences; 30,534,672 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq349 123 7e-23 seq529 118 3e-21 seq420 96.9 1e-14 seq438 86.0 2e-11 >seq349 Length=724169 Score = 123 bits (136), Expect = 7e-23 Identities = 211/306 (69%), Gaps = 0/306 (0%) Strand=Plus/Minus Query 302538 ATTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACG 302597 ||| || ||||| |||||| | ||| | ||||||| | ||||| | |||||| Sbjct 89756 ATTCCTAACGGTACCATCATACTTGACCATGACATCTTCCAAAGCCTTGACGAGACGACG 89697 Query 302598 CTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACC 302657 |||||| ||||||||| | || || ||||| |||||||| ||||| | |||||| | Sbjct 89696 CTGAATGTAACCAGTTTCGGCAGTCTTGACAGCGGTATCAATAAGACCTTCGCGACCAGC 89637 Query 302658 CATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAA 302717 ||| || |||||||| | ||| ||| || || | | | ||| |||| || || Sbjct 89636 CATGGCGTGGAAGAAGAACTCCGATGGTGTAAGTCCTCTCAGGTACGAGTTCTCGACAAA 89577 Query 302718 ACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATA 302777 ||||| | ||||| || | || ||| || || || |||||||| | || || | Sbjct 89576 TCCACGAGATTCGGGGGAGTAATCATCCTTTGTGAAATGCGGCAGGGTGCGGTACTTGAA 89517 Query 302778 GCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGA 302837 ||| | || |||||||| || || || |||||||||| | | ||||||| || Sbjct 89516 CCCGAAAGGAATACGCTTGCCCTCCACAGATTGCTGTCCCACAAGGGCAGTCATCTGGGA 89457 Query 302838 AATATT 302843 |||||| Sbjct 89456 AATATT 89451 >seq529 Length=148573 Score = 118 bits (130), Expect = 3e-21 Identities = 241/353 (68%), Gaps = 4/353 (1%) Strand=Plus/Minus Query 133307 gAAGCCCGTGCCTTTTATGGGCTACAGATTGCGATGGAAAATATCCATTCTATCACATAT 133366 |||||||| ||| || || | || ||| ||| || || || || | ||||| Sbjct 107237 GAAGCCCGCTGCTTCTACGGTTTCCAAATTATGATCGAGAACATTCACGCCGAGACATAC 107178 Query 133367 TCTACTCTAATTGATACTTACATCAAAGATACCGTCCAGAAGCACAAAC-TATTCAACGC 133425 || || ||||| || |||||||| || | || | ||||| || | ||||| || Sbjct 107177 TCCCTCCTCATTGACACATACATCAAGGAGCAAGCTCA-ACGCACATACCTCTTCAATGC 107119 Query 133426 CATTAGCGAAT-TTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGG 133484 ||| | || ||||||| || || ||||| | || |||||| | | |||||||| | Sbjct 107118 CATC-GAGACCATTCCTTGCATCAAGAAGAAGGCCGATTGGGCTGTCAGGTGGATCCAAG 107060 Query 133485 ACAAGCGTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttt 133544 ||||| | | | || || ||||||||||| || |||| || ||||| ||||| | Sbjct 107059 ACAAGGATTCTACCTTCGCCCAGCGTCTCGTTGCCTTCGCTGCCGTTGAGGGTATTTTCT 107000 Query 133545 tCAGTGGTGCGTTCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGT 133604 || ||| | ||| || ||||| |||||||| |||||||| | | |||| || Sbjct 106999 TCTCTGGCTCCTTCGCATCCATTTTCTGGCTTAAGAAGCGTGGCCTCATGGCTGGCCTTA 106940 Query 133605 GTTTTTCTAACGAACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGCC 133657 || |||||||| || ||||| | ||||||| || ||||| || || ||| Sbjct 106939 CCTTCTCTAACGAGCTCATTTCCCGCGACGAGGGTCTCCACACTGACTTCGCC 106887 >seq420 Length=427535 Score = 96.9 bits (106), Expect = 1e-14 Identities = 113/150 (75%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 251839 TGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGT 251898 || || || ||||||||| ||||||||| ||||| ||||| |||| ||| || | Sbjct 11723 TGAGCAATCGTCATACGAGAGGGAATAGCGTGGGGGTTGATAATGAGGTCAGGCACAATA 11664 Query 251899 CCATCAGCAGTGAAGGGCATATCCTTTTCCTCAATAA-TGTTTCCAATAGTTCCCTTTTG 251957 || || |||||| ||||| || | || | ||| || | ||||| ||||||||||| Sbjct 11663 CCCTCGCGAGTGAAAGGCATGTCTTCTTGG-CGGTAAGTGATACCAATGGTTCCCTTTTG 11605 Query 251958 TCCGTGACGAGAACTGAACTTATCACCAAT 251987 ||||||||||| ||||||||||||||| Sbjct 11604 ACCGTGACGAGAGGCGAACTTATCACCAAT 11575 >seq438 Length=277174 Score = 86.0 bits (94), Expect = 2e-11 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 354015 GGCGAGAGCACCAAGCGAGTCACGGTCGAGGAAATTAGTAGGTTCGTCAAGGATAAGAAC 354074 ||| ||| |||| || ||||||||||| | ||||||||| || ||||| |||| |||| Sbjct 28012 GGCAAGACCACCGAGGGAGTCACGGTCCAAGAAATTAGTCGGCTCGTCGAGGACGAGAAG 27953 Query 354075 GTGCGGCTCCATCCACATTGCTGCAGCCAGAACTACCTTAACCTTCTGTCCGCCTGATAG 354134 || || | ||||||| || |||| || || ||||| |||||||| || || || || Sbjct 27952 ATGGGGGTTGTTCCACATGGCGCCAGCGAGGACGACCTTGACCTTCTGGCCACCGGAGAG 27893 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471806304259863