Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20pannorum_20var._20pannorum_20[genbank_20GCA_5F001 630605.1_202016-04-25] 599 sequences; 30,534,672 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq450 143 8e-29 seq534 84.2 7e-11 >seq450 Length=136939 Score = 143 bits (158), Expect = 8e-29 Identities = 175/236 (74%), Gaps = 2/236 (1%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | ||||| | ||| ||||| ||||| || ||||| || | Sbjct 111322 TTTGCATACCACCACGAAGACGGAGAACCAAATGCAGAGTGGACTCCTTCTGAATGTTGT 111263 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || || || || || ||||| || | || || || || || || || || ||||| | Sbjct 111262 AGTCCGACAAGGTGCGGCCATCCTCCAACTGCTTGCCTGCGAAAATCAGGCGCTGCTGGT 111203 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTA-CATTATCAATCGAATCAGAT 140681 | |||||||| || || || || ||||| || ||| ||| |||| || || | ||| ||| Sbjct 111202 CCGGAGGAATACCCTCCTTGTCTTGAATCTT-GCTCTTAACATTGTCGATAGTATCGGAT 111144 Query 140682 GGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | ||| || || || |||| ||||| || || || || || |||||||||||||| Sbjct 111143 GATTCCACCTCGAGCGTAATCGTCTTGCCCGTAAGAGTCTTGACAAAAATCTGCAT 111088 Score = 141 bits (156), Expect = 3e-28 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||||||||| || | | ||||||||||| | ||| ||||| || ||||| || ||||| Sbjct 111546 CATACCACCGCGGAGACGGAGAACAAGATGTAAAGTGGACTCCTTCTGAATGTTGTAATC 111487 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 ||| | || || ||||| || || || || || ||||| ||||| || ||||| || || Sbjct 111486 AGACAGAGTACGGCCATCCTCTAGCTGCTTGCCCGCAAAAATTAGGCGCTGCTGGTCCGG 111427 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || || ||||| || || |||| || || ||||| || | ||| || | || Sbjct 111426 TGGGATGCCCTCCTTATCTTGGATCTTAGACTTGACGTTATCGATGGTATCCGACGACTC 111367 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || | |||| |||||||||||| || || || || || || ||||| Sbjct 111366 GACCTCCAACGTAATTGTCTTTCCGGTGAGAGTCTTGACGAAGATTTGCAT 111316 Score = 120 bits (132), Expect = 9e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || | |||||||| ||||| || ||||| || ||||| Sbjct 111090 CATACCACCACGAAGACGAAGGACCAAGTGAAGAGTCGACTCCTTCTGAATGTTGTAATC 111031 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || || || ||||| || || ||||| || || || || ||||| || || Sbjct 111030 GGAGAGAGTGCGGCCGTCCTCAAGCTGCTTACCAGCGAAAATCAGGCGCTGCTGGTCCGG 110971 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 |||||| || || || |||||||| || | || || || || || | || || | || Sbjct 110970 AGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGACGACTC 110911 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||| || | || | ||||| || || || || || || || |||||||| Sbjct 110910 AACCTCCAAAGTGATGGTCTTGCCAGTGAGGGTCTTAACGAAGATCTGCAT 110860 Score = 109 bits (120), Expect = 2e-18 Identities = 119/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 140580 CCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCT 140639 ||||| || ||||| || ||||||||||| || || ||||| || || || || || || Sbjct 111701 CCATCCTCGAGTTGCTTACCAGCAAAGATCAGGCGCTGCTGGTCCGGTGGGATACCCTCC 111642 Query 140640 TTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTA 140699 ||||||||||| || | || || || ||||| | || || | ||||| || || ||| Sbjct 111641 TTATCCTGAATCTTGGACTTGACGTTGTCAATGGTGTCCGAAGACTCAACCTCGAGAGTA 111582 Query 140700 ACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | |||||||| || || || || || ||||||||||| Sbjct 111581 ATAGTCTTTCCCGTCAGGGTCTTGACGAAAATCTGCAT 111544 Score = 107 bits (118), Expect = 6e-18 Identities = 150/208 (72%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || | || ||||| ||||| || || || || || || Sbjct 110862 CATACCACCACGCAGACGGAGGACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTC 110803 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || || || |||||||| || || || ||||| ||||||||||| || || Sbjct 110802 GGAGAGGGTGCGGCCGTCCTCAAGTTGCTTGCCGGCGAAGATCAGACGTTGCTGGTCCGG 110743 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCT-TTTACATTATCAATCGAATCAGATGGTT 140685 |||||||| || || || ||||| || ||| || || || || || | ||| || | | Sbjct 110742 GGGAATTCCCTCCTTGTCTTGAATCTT-GCTCTTAACGTTGTCGATGGTATCGGAGGACT 110684 Query 140686 CAACTTCAAGTGTAACTGTCTTTCCGGT 140713 | || ||||| || | ||||| || || Sbjct 110683 CGACCTCAAGGGTGATGGTCTTGCCAGT 110656 >seq534 Length=453533 Score = 84.2 bits (92), Expect = 7e-11 Identities = 117/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 140550 TTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATT 140609 || || || || || || || | || || ||||| || || || || ||||||||||| Sbjct 392644 TTCTGGATGTTGTAGTCGGAAAGGGTGCGTCCATCCTCGAGCTGCTTGCCAGCAAAGATC 392703 Query 140610 AGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCA 140669 || || ||||| || ||||||||||| || || || || || || | || ||||| || Sbjct 392704 AGGCGCTGCTGGTCCGGAGGAATTCCCTCCTTGTCTTGGATCTTCGACTTGACATTGTCG 392763 Query 140670 ATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGT 140713 || | ||| || | || || ||||| || | ||||| || || Sbjct 392764 ATAGTATCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGT 392807 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515242770895997