Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._2003VT05_20[genbank_20GCA_5F001662645.1_20201 6-06-24] 856 sequences; 33,292,581 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq168 111 2e-19 seq4 107 2e-18 >seq168 Length=66023 Score = 111 bits (122), Expect = 2e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 |||||||||| || |||||| ||||| |||||||| | ||| || || | || || Sbjct 53812 ACCAAATGCAGGGTCGACTCCTTCTGAATGTTGTAATCCGACAGGGTGCGGCCATCCTCC 53753 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 | |||||||||||| || || || ||||||||||| | || | | |||||||||| || Sbjct 53752 AACTGCTTACCAGCAAAGATCAGGCGCTGCTGGTCCGGAGGAATACCCTCCTTGTCC-TG 53694 Query 43095 ATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 43153 | | || | |||| | | | || || |||||||| || | ||| || || || Sbjct 53693 AATCTTCGACTTGACGTTATCAATGGTATCAGATGATTCCACCTCAAGCGTAATCGTCTT 53634 Query 43154 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||||| || ||||| ||||| || ||||| Sbjct 53633 GCCCGTAAGAGTCTTGACAAAAATCTGCAT 53604 Score = 107 bits (118), Expect = 2e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| ||||| ||||| || | ||||| || |||| || |||||||| || ||||| Sbjct 53567 CTCCTTCTGAATGTTGTAGTCGGAGAGAGTGCGACCGTCCTCAAGCTGCTTGCCCGCGAA 53508 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || ||||||||||| | || | || |||||||||| ||| || || | | Sbjct 53507 AATCAGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGGATCTTCGACTTCACATT 53448 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | |||||| ||| || || || | |||||||| ||||| || || ||||| || Sbjct 53447 GTCGATGGTGTCGGACGACTCAACCTCCAAAGTGATGGTCTTGCCAGTAAGGGTCTTGAC 53388 Query 43172 AAAGATTTGCAT 43183 ||||| ||||| Sbjct 53387 GAAGATCTGCAT 53376 Score = 93.3 bits (102), Expect = 5e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 42980 ATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTG 43039 |||||| || |||||| || || |||||||||| ||| || || | || || ||||| Sbjct 54035 ATGCAACGTAGACTCCTTCTGGATGTTGTAATCAGACAGGGTACGGCCATCTTCAAGCTG 53976 Query 43040 CTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTT 43099 ||| || ||||| || || ||||||||||| | || | || |||||| || ||| || Sbjct 53975 CTTGCCCGCGAAAATCAGGCGCTGCTGGTCCGGTGGGATGCCCTCCTTATCTTGGATCTT 53916 Query 43100 TTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGT 43159 |||| | | | || || |||||| || || | ||| || || || || || Sbjct 53915 GGACTTGACGTTATCGATGGTATCCGACGATTCGACTTCCAGCGTAATTGTCTTTCCGGT 53856 Query 43160 TAGCGTCTTTACAAAGATTTGCAT 43183 || ||||| || || |||||||| Sbjct 53855 AAGGGTCTTGACGAAAATTTGCAT 53832 >seq4 Length=289853 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 ||||| || | ||| |||||| || || ||||| || | || || || |||| || Sbjct 37182 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCG 37241 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 |||||||| || ||||| || || ||||||||||| | || | | |||||||||| | Sbjct 37242 AGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTGG 37301 Query 43095 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 43154 || || |||| | | | || ||| ||| ||||| || | ||||| || ||| Sbjct 37302 ATCTTGGACTTGACATTGTCGATAGTATCGGACGACTCCACCTCAAGGGTGATAGTCTTG 37361 Query 43155 CCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||||| || ||||| || ||||||||||| Sbjct 37362 CCCGTCAGGGTCTTCACGAAGATTTGCAT 37390 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571811481551680