Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._2003VT05_20[genbank_20GCA_5F001662645.1_20201 6-06-24] 856 sequences; 33,292,581 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq122 179 5e-40 seq59 131 2e-25 >seq122 Length=96280 Score = 179 bits (198), Expect = 5e-40 Identities = 416/619 (67%), Gaps = 6/619 (1%) Strand=Plus/Plus Query 63189 TCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGAC 63248 || ||||| || || |||| | |||||| ||| ||||| | || ||||| | | | Sbjct 6125 TCAAACTCATCGCCGTAAACGTCTGCCAATCCAGGGCATTCGTTGGGGCACATGAGGGTC 6184 Query 63249 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AA 63307 || || |||| | || || || ||||| |||||||| || ||||| ||||| ||| || Sbjct 6185 CAGTCGCCGTTCTTCTCAACACGCTTCATGAAGAGATCCGGGATCCAGAGAGC-ATAGAA 6243 Query 63308 TAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 63367 | || | | | |||||| || || |||||| | || || |||||| | | Sbjct 6244 CAAGTCACGGGCACGGACTTCCTCCTTGCCGTGGTTCTTTCTCAGGTCCAGGAACTCAAA 6303 Query 63368 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 63427 | ||| | ||||| || || | ||| ||||| | | | ||||| || ||||| || || Sbjct 6304 GACATCCGCGTGCCATGGCTCGACGTAGATGGCGAAAGCACCAGGGCGCTTGTTGCCACC 6363 Query 63428 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGA 63487 ||| || | ||| || |||||||| || | || | | ||| |||| |||||||| || Sbjct 6364 CTGGTCAACGTACCTCGCGGTGTTGTTGAACACGCGGAGCATGGGAACGATACCGTTCGA 6423 Query 63488 TATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGATAGACC 63547 | || |||||||||| || || | ||| ||||||| ||| | || | || Sbjct 6424 GTTTCCGTTGGTACCGGCAATGTATGCACCAGTGGCACGGATACGATGGATGTTCAATCC 6483 Query 63548 TATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAAC-GTGTCATAGATGCCTT 63606 || || || || | || ||||| | || || ||| || | ||||||||||| || | Sbjct 6484 GATACCTCCGGCAGTCTTTGAGATCATGGCACA-CGTCTTGAGTGTGTCATAGATACCCT 6542 Query 63607 CTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTC 63666 | || ||||| || |||||| | | || ||| |||| ||| | | || | Sbjct 6543 CAATACTATCCTCCTTCATGTCGACCAAGAAGCAGGACGACAGCTGGGCTTGTGGTGTAC 6602 Query 63667 CCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACG 63726 | ||||| || | || || || ||||| || || |||| ||| | || ||||| | Sbjct 6603 CAGCATTGAAGAGCGTTGGGGAGGCGTGTGTGAAGTATTTGGAAGACATGAGGTTGTATG 6662 Query 63727 TCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAACATG 63785 |||| || | || |||||| || | ||||| || || || |||||||| | |||| Sbjct 6663 TCTCGATTGTCTTCTCAATATCCTCACCG-TGAATGCCCACGGCAACACGCATAATCATG 6721 Query 63786 TGCTGAGGTCTTTCAACAA 63804 ||||| || || ||| ||| Sbjct 6722 TGCTGTGGCCTCTCAGCAA 6740 >seq59 Length=149784 Score = 131 bits (144), Expect = 2e-25 Identities = 365/554 (66%), Gaps = 7/554 (1%) Strand=Plus/Minus Query 33278 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTC 33337 ||| || || | |||||||| || | ||||| || ||||| || || || |||||| | Sbjct 66101 CATGACACCAGTCTTTTGGTAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTTCCTGC 66042 Query 33338 CAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCC 33397 ||| || || || |||||||| || || || |||| ||||| | || | | | Sbjct 66041 CAAGGAGATGTTCTCCATGAAGTCGAAGGGGTTGGCCGACTTGTAG-TACTTCTCGTTAC 65983 Query 33398 CAATTCAGAA-ATCAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAAT 33456 | | ||| | || || || |||||||| || || ||| ||||||| | | Sbjct 65982 CGAGGGAGAGCAGCAGCCTGTCGGCGACGAACTCAATGTATTGCTTCATCAAGTTGGCGT 65923 Query 33457 TCATTCCTATGAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCG 33516 |||| || | || | ||||| ||| |||| || || ||||| || ||| || | Sbjct 65922 TCATGCCGAGCAGCGCACAGGGAAGTGCCTCAGTCAGGAACTCTTGCTCGATGCTGACAG 65863 Query 33517 CATTTGTTATAATAAATCTAACGGT-TTCTTCACTCGGTGGATGTAATAAATGTTTAAAC 33575 | | || || | | |||| ||||| | || || ||| | || || Sbjct 65862 CCTCGGTAATGACGTCTTGGACGGCCTTCTTGCTTGGGCGG-TGTCTAAGGTGGGAGAAG 65804 Query 33576 ATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAAC 33635 | | || ||||| || ||| ||||||||||| | || | ||||| || || Sbjct 65803 AGGAGGCAGGCGAAGTCAGTGTGGAGACCCTCGTCACGGGAGATGAGCTCGTTGGAGAAG 65744 Query 33636 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAA 33695 || || || | ||| || |||||||| || ||||| || ||||| ||||| || ||||| Sbjct 65743 GTCAGGCCAGCCATGAGACCACGCTTCTTCAGCCAGAAAATGGAGGCGAAGGAACCGGAG 65684 Query 33696 AAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CGCTG 33752 |||||||| || || || || || ||||||| || | || | || || | || Sbjct 65683 AAGAAGATACCCTCAACGGCGGCGAAGGCAACGAGACGCTGAGCGAAAGTGGAGTCCTTG 65624 Query 33753 TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATG 33812 || || |||||| | ||||| ||||||||||| || | ||||| || || || ||| Sbjct 65623 TCTTGGATCCACCTAACTGCCCAGTCGGCCTTCTTCTTGATGCAAGGAATGGTCTCGATG 65564 Query 33813 GCATTAAAGAGATA 33826 ||||| ||||| || Sbjct 65563 GCATTGAAGAGGTA 65550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629810860951680