Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._2003VT05_20[genbank_20GCA_5F001662645.1_20201 6-06-24] 856 sequences; 33,292,581 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq59 114 2e-20 >seq59 Length=149784 Score = 114 bits (126), Expect = 2e-20 Identities = 553/868 (64%), Gaps = 20/868 (2%) Strand=Plus/Minus Query 41761 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTC 41820 ||| || || | |||||||| || | ||||| || ||||| || || ||||||||| | Sbjct 66101 CATGACACCAGTCTTTTGGTAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTTCCTGC 66042 Query 41821 CAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCC 41880 ||| || || || |||||||| || || || |||| || || | || | | | Sbjct 66041 CAAGGAGATGTTCTCCATGAAGTCGAAGGGGTTGGCCGACTTGTAG-TACTTCTCGTTAC 65983 Query 41881 CAATTCAGAA-ATCAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAAT 41939 | | ||| | || || || |||| ||| || || ||| ||||||| | | Sbjct 65982 CGAGGGAGAGCAGCAGCCTGTCGGCGACGAACTCAATGTATTGCTTCATCAAGTTGGCGT 65923 Query 41940 TCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCG 41999 |||| || | || | ||||| ||| |||| || || ||||| || || ||| | Sbjct 65922 TCATGCCGAGCAGCGCACAGGGAAGTGCCTCAGTCAGGAACTCTTGCTCGATGCTGACAG 65863 Query 42000 CGTCTGTTATAATAGATCTT--ACTGT-TTCTTCACTCGGTGGATACAATAAATGTTTAA 42056 | || || || | |||| || | ||||| | || || | | | || | Sbjct 65862 CCTCGGTAATGACG--TCTTGGACGGCCTTCTTGCTTGGGCGGTGTCTA-AGGTGGGAGA 65806 Query 42057 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAA 42116 | | | || ||||| || ||| |||||||| || | || | |||||||| | Sbjct 65805 AGAGGAGGCAGGCGAAGTCAGTGTGGAGACCCTCGTCACGGGAGATGAGCTCGTTGGAGA 65746 Query 42117 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAG 42176 | || || || | ||| || |||||||| || ||||| || || || || || || || | Sbjct 65745 AGGTCAGGCCAGCCATGAGACCACGCTTCTTCAGCCAGAAAATGGAGGCGAAGGAACCGG 65686 Query 42177 AAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CAC 42233 | |||||||| || || || || || ||||||| || | || | || || | Sbjct 65685 AGAAGAAGATACCCTCAACGGCGGCGAAGGCAACGAGACGCTGAGCGAAAGTGGAGTCCT 65626 Query 42234 TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 42293 |||| || |||||| | ||||| ||||||||||| || | ||||| || || || | Sbjct 65625 TGTCTTGGATCCACCTAACTGCCCAGTCGGCCTTCTTCTTGATGCAAGGAATGGTCTCGA 65566 Query 42294 TGGCATTAAAGAGATAGtttttttCA--TTACTATCTTTAACATATGTATCGATCAAAAG 42351 ||||||| ||||| || | || | || | || || | ||||| ||||| | || Sbjct 65565 TGGCATTGAAGAGGTATGTGCGTTGAGCTTGC--TCCTTGATGTATGTGTCGATGAGGAG 65508 Query 42352 ACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGC 42411 || | || | |||||||| || || || || || |||||||| || | ||| Sbjct 65507 GGAGTATGTCTCGGCGTGAATGTTCTCGATCATGATTTGGAAACCGTAGAAGCAGCGGGC 65448 Query 42412 CTCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTC 42471 || | | || || || | | || || || | || ||||| || |||||||| Sbjct 65447 TTCTGGGATTTGGACCTCGCTGCTGAAGCGCTCGAGGAGGTTCTCGTTGACAATTCCGTC 65388 Query 42472 ACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAA--- 42528 | || || || || || | || || || || || || | || ||| | Sbjct 65387 AGACGCGGCGAAGAAAGCGAGAACGTGGGAAATGAAGTAGCGCTCAT-CGTCGTTGAGGC 65329 Query 42529 -TTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATG 42587 || ||||| || | | || || || | ||| | || ||| | ||||| || || | Sbjct 65328 GGTTGTTCCAGTCGTGAAGGTCCTTGGAGAGATCAATCTCCTCTGCTGTCCAGAAAGACG 65269 Query 42588 CTTCTGCCTTTTTATACATATTCCAGAT 42615 | || ||||| || ||||| | |||||| Sbjct 65268 CCTCGGCCTTCTTGTACATCTGCCAGAT 65241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671132018810560