Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._2003VT05_20[genbank_20GCA_5F001662645.1_20201 6-06-24] 856 sequences; 33,292,581 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq168 145 6e-30 seq4 123 2e-23 seq41 102 7e-17 >seq168 Length=66023 Score = 145 bits (160), Expect = 6e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| |||||||| || ||| | || || || ||| | || ||||| |||||| | | Sbjct 53604 ATGCAGATTTTTGTCAAGACTCTTACGGGCAAGACGATTACGCTTGAGGTGGAATCATCT 53663 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || | |||| || ||||| ||||||||||||||||| || || || Sbjct 53664 GATACCATTGATAACGTCAAGTCGAAGATTCAGGACAAGGAGGGTATTCCTCCGGACCAG 53723 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || ||||| || || ||||| |||||| ||||||| | || ||||||||| Sbjct 53724 CAGCGCCTGATCTTTGCTGGTAAGCAGTTGGAGGATGGCCGCACCCTGTCGGATTACAAC 53783 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| || || || ||| | ||||| ||| | || | || || ||| Sbjct 53784 ATTCAGAAGGAGTCGACCCTGCATTTGGTTCTCCGTCTTCGTGGTGGT 53831 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 || || || || |||| ||||| || || | | |||||| | ||| | | || Sbjct 53172 ACTGGCAAGACCATCACCCTTGAGGTCGAGTCGTCTGATACCATCGACAACGTTAAGAGC 53231 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || |||||||||||||| ||||| || || || |||||||| || || |||||||| Sbjct 53232 AAGATCCAAGACAAGGAGGGAATTCCCCCGGACCAGCAACGTCTGATCTTCGCCGGCAAG 53291 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 || | ||||| ||||||| ||||||| |||||||| || || || || ||| | || Sbjct 53292 CAACTTGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCGACCCTCCAC 53351 Query 22423 TTAGTTTTGCGATTGCGCGGAGGT 22446 || || | || |||| || ||| Sbjct 53352 TTGGTCCTCCGTCTGCGTGGTGGT 53375 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || || || | ||||| || || | || || ||||| ||| | | Sbjct 53832 ATGCAAATTTTCGTCAAGACCCTTACCGGAAAGACAATTACGCTGGAAGTCGAATCGTCG 53891 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || | |||| || || ||||| |||||||| || ||||| || || Sbjct 53892 GATACCATCGATAACGTCAAGTCCAAGATCCAAGATAAGGAGGGCATCCCACCGGACCAG 53951 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || || ||||| ||| | || ||| ||| ||| | || ||||||||| Sbjct 53952 CAGCGCCTGATTTTCGCGGGCAAGCAGCTTGAAGATGGCCGTACCCTGTCTGATTACAAC 54011 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || || || || | ||| | ||| | || | || || ||| Sbjct 54012 ATCCAGAAGGAGTCTACGTTGCATCTTGTTCTCCGCCTCCGTGGTGGT 54059 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || || ||||| | || || || | || Sbjct 53376 ATGCAGATCTTCGTCAAGACCCTTACTGGCAAGACCATCACTTTGGAGGTTGAGTCGTCC 53435 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| || | || || || || ||||||||||| ||||| || || || Sbjct 53436 GACACCATCGACAATGTGAAGTCGAAGATCCAGGACAAGGAGGGCATTCCTCCGGACCAG 53495 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || || ||||| ||| | ||||| ||||| ||||||| |||||| Sbjct 53496 CAGCGCCTGATTTTCGCGGGCAAGCAGCTTGAGGACGGTCGCACTCTCTCCGACTACAAC 53555 Query 22399 ATTCAAAAAGAATCCAC 22415 ||||| || || || || Sbjct 53556 ATTCAGAAGGAGTCGAC 53572 >seq4 Length=289853 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || | || || || || |||| ||||| ||||| | || Sbjct 37390 ATGCAAATCTTCGTGAAGACCCTGACGGGCAAGACTATCACCCTTGAGGTGGAGTCGTCC 37331 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | ||| || |||| || || || ||||||||||| ||||| || || || Sbjct 37330 GATACTATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGACCAG 37271 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || |||||||| ||| | ||||| ||||||| | || || |||||| Sbjct 37270 CAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCGGACTACAAC 37211 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || || |||||| | || || || || || | || |||||| Sbjct 37210 ATCCAGAAGGAGTCCACCCTTCACTTGGTCCTGAGACTCCGTGGAGGT 37163 >seq41 Length=173993 Score = 102 bits (112), Expect = 7e-17 Identities = 130/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 22228 TTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTG 22287 || || || || || || || || || |||| ||||| || || || ||||||| | Sbjct 152437 TTCGTCAAGACCTTGACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGATACTATC 152378 Query 22288 GACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTT 22347 ||| || |||| || ||||| ||||||||||| ||||| || || || || || || Sbjct 152377 GACAATGTCAAGTCGAAGATTCAGGACAAGGAGGGAATTCCTCCGGACCAGCAGCGCCTG 152318 Query 22348 ATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAA 22406 || ||||| ||||| ||| | |||||| ||||| | ||||| |||||||| || || Sbjct 152317 ATCTTTGCTGGCAAGCAGCTCGAGGATGGACGCACTCTTTCCGACTACAACATCCAGAA 152259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419723621187640