Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._2003VT05_20[genbank_20GCA_5F001662645.1_20201 6-06-24] 856 sequences; 33,292,581 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq122 183 4e-41 seq59 114 2e-20 >seq122 Length=96280 Score = 183 bits (202), Expect = 4e-41 Identities = 412/614 (67%), Gaps = 4/614 (1%) Strand=Plus/Plus Query 77925 TCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGAC 77984 ||||| ||||| || |||| || |||||||||||||||| || |||||||| | | | Sbjct 6125 TCAAACTCATCGCCGTAAACGTCTGCCAATCCAGGGCATTCGTTGGGGCACATGAGGGTC 6184 Query 77985 CAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAAT 78044 ||||| || | | || ||| || ||||| |||||||| || ||||| |||||| || Sbjct 6185 CAGTCGCCGTTCTTCTCAACACGCTTCATGAAGAGATCCGGGATCCAGAGAGCATAGAAC 6244 Query 78045 AGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATA 78104 | || |||| | ||| || || || |||||| | || || || ||||| | Sbjct 6245 AAGTCACGGGCACGGACTTCCTCCTTGCCGTGGTTCTTTCTCAGGTCCAGGAACTCAAAG 6304 Query 78105 ATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCC 78164 | ||| | |||||||| || | || || || | | | ||||| || || || || ||| Sbjct 6305 ACATCCGCGTGCCATGGCTCGACGTAGATGGCGAAAGCACCAGGGCGCTTGTTGCCACCC 6364 Query 78165 TGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGAT 78224 || || | || || |||||||| || | || | | ||| |||| |||||||| || Sbjct 6365 TGGTCAACGTACCTCGCGGTGTTGTTGAACACGCGGAGCATGGGAACGATACCGTTCGAG 6424 Query 78225 GTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGATATCCCT 78284 |||| || || || | ||| || ||| | || || ||| | ||| | || Sbjct 6425 TTTCCGTTGGTACCGGCAATGTATGCACCAGTGGCACGGATACGATGGATGTTCAATCCG 6484 Query 78285 ATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGT-TTCAATGTATCGTAGATACCCTC 78343 || ||||| || |||| || || | || | |||| || | ||| || ||||||||||| Sbjct 6485 ATACCTCCGGCAGTCTTTGAGATCATGGCAC-ACGTCTTGAGTGTGTCATAGATACCCTC 6543 Query 78344 TATACTGTCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCC 78403 ||||| || ||| |||||| | | || ||| |||| || || || || Sbjct 6544 AATACTATCCTCCTTCATGTCGACCAAGAAGCAGGACGACAGCTGGGCTTGTGGTGTACC 6603 Query 78404 TGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGTATGT 78463 ||||| || | || || || || || || || |||| ||| | || |||||||| Sbjct 6604 AGCATTGAAGAGCGTTGGGGAGGCGTGTGTGAAGTATTTGGAAGACATGAGGTTGTATGT 6663 Query 78464 TTCAATAGCTGATTCTATGTCC-CATTGATGAATTCCTACCGCTACACGCATCAACATAT 78522 || || | || || ||| || | ||||| || || || |||||||| | ||| | Sbjct 6664 CTCGATTGTCTTCTCAATATCCTCACCG-TGAATGCCCACGGCAACACGCATAATCATGT 6722 Query 78523 GCTGAGGTCTTTCA 78536 |||| || || ||| Sbjct 6723 GCTGTGGCCTCTCA 6736 >seq59 Length=149784 Score = 114 bits (126), Expect = 2e-20 Identities = 340/520 (65%), Gaps = 16/520 (3%) Strand=Plus/Minus Query 48183 TCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCG 48242 ||||| || || || || || | ||| || ||||| || || ||||| || || | ||| Sbjct 65755 TCGTTGGAGAAGGTCAGGCCAGCCATGAGACCACGCTTCTTCAGCCAGAAAATGGAGGCG 65696 Query 48243 AAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAA 48302 || || || || ||||| || || || ||||| || || || || | || || || Sbjct 65695 AAGGAACCGGAGAAGAAGATACCCTCAACGGCGGCGAAGGCAACGAGACGCTGAGCGAAA 65636 Query 48303 CTGGCTTCGTTGTGT---ATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGC 48359 ||| || |||| | ||||||| |||||| || ||||||||||| | ||||| Sbjct 65635 GTGGAGTCCTTGTCTTGGATCCACCTAACTGCCCAGTCGGCCTTCTTCTTGATGCAAGGA 65576 Query 48360 ATTGTTTCTATAGCATTAAAGAGAAAGtttttttCA--TTGCTATCTTTAACGTAAGTAT 48417 || || || || ||||| ||||| | | || | |||| || || | ||| || | Sbjct 65575 ATGGTCTCGATGGCATTGAAGAGGTATGTGCGTTGAGCTTGC--TCCTTGATGTATGTGT 65518 Query 48418 CTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAA 48477 | || | || || | |||| |||||| || || || || || || ||||| | Sbjct 65517 CGATGAGGAGGGAGTATGTCTCGGCGTGAATGTTCTCGATCATGATTTGGAAACCGTAGA 65458 Query 48478 AACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTA 48537 | || | ||||||| ||| || ||||| | | || || || | ||||| || | Sbjct 65457 AGCAGCGGGCTTCTGGGATTTGGACCTCGCTGCTGAAGCGCTCGAGGAGGTTCTCGTTGA 65398 Query 48538 CTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATA------TTTTT 48591 | ||||| ||| || || || || || | || || ||| || || | | Sbjct 65397 CAATTCCGTCAGACGCGGCGAAGAAAGCGAGAACGTGGGAAATGAAGTAGCGCTCATCGT 65338 Query 48592 CGTTGGAAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTG 48651 ||||| || | | || |||||||| | | || || || | ||| | || || |||| Sbjct 65337 CGTTG--AGGC-GGTTGTTCCAGTCGTGAAGGTCCTTGGAGAGATCAATCTCCTCTGCTG 65281 Query 48652 TCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATAT 48691 |||| || || ||||| || || || ||||| | ||| || Sbjct 65280 TCCAGAAAGACGCCTCGGCCTTCTTGTACATCTGCCAGAT 65241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694661367043840