Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._2004NY16_20[genbank_20GCA_5F001630575.1_20201 6-05-27] 3,119 sequences; 31,314,325 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq2289 114 1e-20 seq2358 107 2e-18 >seq2289 Length=32595 Score = 114 bits (126), Expect = 1e-20 Identities = 153/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 |||||||||| || |||||||||||| ||||| || | |||||| || | || || Sbjct 1436 ACCAAATGCAGGGTCGACTCCTTTTGAATGTTGTAGTCCGACAGAGTGCGGCCATCCTCC 1495 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 |||||||||||||| || || || ||||||||||| | || | | |||||||||| || Sbjct 1496 AGCTGCTTACCAGCAAAGATCAGGCGCTGCTGGTCCGGAGGAATTCCCTCCTTGTCC-TG 1554 Query 43095 ATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 43153 | | || | |||| | | | || || |||||||| || | ||| || || || Sbjct 1555 AATCTTCGACTTGACGTTATCAATGGTATCAGATGATTCCACCTCAAGCGTAATCGTCTT 1614 Query 43154 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||||| || ||||| ||||| || ||||| Sbjct 1615 TCCCGTAAGAGTCTTGACAAAAATCTGCAT 1644 Score = 113 bits (124), Expect = 5e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| ||||| ||||| || | ||||| || |||| || |||||||| || ||||| Sbjct 1681 CTCCTTCTGAATGTTGTAGTCGGAGAGAGTGCGACCGTCCTCGAGCTGCTTGCCCGCGAA 1740 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || ||||||||||| | || | || |||||||||| ||| || || | | Sbjct 1741 AATCAGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGGATCTTCGACTTCACATT 1800 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | |||||| ||| || || || | |||||||| |||||||| || ||||| || Sbjct 1801 GTCGATGGTGTCGGACGACTCAACCTCCAAAGTGATGGTCTTGCCCGTGAGGGTCTTGAC 1860 Query 43172 AAAGATTTGCAT 43183 ||||| ||||| Sbjct 1861 GAAGATCTGCAT 1872 Score = 98.7 bits (108), Expect = 1e-15 Identities = 167/237 (70%), Gaps = 4/237 (2%) Strand=Plus/Plus Query 42949 CCTATTGTCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGT 43008 ||||||| || || | | ||| | |||||| || | ||||||||||| || || |||| Sbjct 954 CCTATTGGCCGCCACGAAGACGGAGCACCAAGTGAAGCGTGCTCTCCTTCTGGATGTTGT 1013 Query 43009 AATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGT 43068 | || ||| |||| | | || || |||||||| || ||||| || || |||||||||| Sbjct 1014 AGTCGCTCAGCGTCCTCCCATCCTCGAGCTGCTTGCCCGCGAAAATCAGGCGCTGCTGGT 1073 Query 43069 CGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCG-CCACCGTGTCGCT 43126 | | || | | |||||| ||| ||| | || | |||| ||| | | | ||||| Sbjct 1074 CCGGTGGGATACCCTCCTTATCC-TGAATCTTGGACTTGA-CGTTGTCAATGGTGTCCGA 1131 Query 43127 CGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || || |||| || ||||| || || || | ||||| || || || ||||| Sbjct 1132 AGACTCAACCTCGAGAGTAATGGTCTTTCCGGTCAAGGTCTTGACGAAAATCTGCAT 1188 Score = 86.0 bits (94), Expect = 7e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| |||| ||| || || | || || |||||||| || ||||| Sbjct 1225 CTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCCTCGAGCTGCTTGCCCGCGAA 1284 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || ||||||||||| | || | || |||||| || ||| || |||| | Sbjct 1285 AATCAGGCGCTGCTGGTCCGGTGGGATGCCCTCCTTATCTTGGATCTTAGACTTGACGTT 1344 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | || || ||| || || || | ||| || || || || || || ||||| || Sbjct 1345 ATCGATGGTATCCGACGACTCGACTTCCAGCGTAATTGTCTTTCCGGTGAGAGTCTTGAC 1404 Query 43172 AAAGATTTGCAT 43183 ||||||||||| Sbjct 1405 GAAGATTTGCAT 1416 >seq2358 Length=47611 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 ||||| || | ||| |||||| || || |||||||| | || || || | || || Sbjct 17984 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCCGAAAGGGTGCGGCCATCCTCG 18043 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 |||||||| || ||||| || || ||||||||||| | || | | |||||||||| | Sbjct 18044 AGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTGG 18103 Query 43095 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 43154 || || |||| | | | || ||| ||| ||||| || | ||||| || ||| Sbjct 18104 ATCTTGGACTTGACATTGTCGATAGTATCGGACGACTCCACCTCAAGGGTGATAGTCTTG 18163 Query 43155 CCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||||| || ||||| || ||||||||||| Sbjct 18164 CCCGTCAGGGTCTTCACGAAGATTTGCAT 18192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571795306261320