Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._2004NY16_20[genbank_20GCA_5F001630575.1_20201 6-05-27] 3,119 sequences; 31,314,325 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq3051 165 7e-36 seq2657 125 6e-24 seq2289 120 3e-22 seq2358 104 2e-17 >seq3051 Length=56537 Score = 165 bits (182), Expect = 7e-36 Identities = 545/837 (65%), Gaps = 23/837 (3%) Strand=Plus/Plus Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629 || ||| | |||||||| ||||| |||||||| || ||||| | || || | || || Sbjct 42547 ATCTGGCAGATGTACAAGAAGGCGGAAGCATCTTTCTGGACAGCAGAGGAGATTGATCTC 42606 Query 57630 TCTAAGGATCTGAGCGATTGGGAT--TC-CCTCAAAGAATCTGAGAGAAATTTTATTAAA 57686 || ||||| || ||| ||| | || |||||| || |||| | | || || Sbjct 42607 TCCAAGGACCTTCACGACTGGAACAATCGCCTCAATGATGATGAGCGCTACTTCATCTCC 42666 Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746 || || | || || |||||||| || || || ||||| |||||||| | |||| | Sbjct 42667 CATGTTCTCGCTTTCTTCGCCGCGTCTGACGGAATTGTCAACGAGAACCTCCTCGAGCGC 42726 Query 57747 TTTTCACAAG--AAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCA 57804 || || || | || || | | || || | ||||| ||||| || ||| | | Sbjct 42727 TT--CAGCAGCGAGGTCCAGATCCCAGAAGCCCGCTGCTTCTACGGTTTCCAAATCATGA 42784 Query 57805 TTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACG 57864 | || ||| | || | || | || || || |||||||| || ||| | ||||| | | Sbjct 42785 TCGAGAACATTCACGCCGAGACATACTCCCTCCTCATCGACACATACATCAAGGAGCAGG 42844 Query 57865 A-CGAGAAACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCA 57923 | | || || || ||||| || ||||| || || || ||| |||||||| Sbjct 42845 CTCAACGGACATAC-CTCTTCAATGCCATCGAGACCATTCCTTGCATCAAGAAGAAGGCC 42903 Query 57924 GAGTGGTCAATCAAATGGATAAAAAGCGCCACGG---CCACGTTCGCCGAGAGGCTAATC 57980 || ||| || | | ||||| || | | || | || || || || | || | Sbjct 42904 GACTGGGCAGTTAGGTGGATCCAA---GATAAGGATTCTACCTTTGCTCAGCGTCTCGTT 42960 Query 57981 GCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATG 58040 || ||||| || || || ||||| ||||| || ||| ||| || | || || ||| | Sbjct 42961 GCCTTCGCTGCTGTTGAGGGTATCTTCTTCTCCGGCTCCTTCGCCTCCATTTTCTGGCTC 43020 Query 58041 AAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAG 58100 ||||| || ||||| ||| | |||||||| || |||||| | || || || || ||| Sbjct 43021 AAGAAGCGTGGCCTCATGGCTGGCCTGACCTTCTCGAACGAGCTCATCTCCCGTGATGAG 43080 Query 58101 GGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACCG---ACG 58157 |||||||| || || || || ||||| | | ||| ||| || | | |||| | | Sbjct 43081 GGTCTCCACACCGACTTCGCCTGCCTCCTCTTCTCCCACCTT----AGACACCGCCCAAG 43136 Query 58158 C-GGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCAC 58216 | | | | || ||| | || |||||||| ||| ||||| | ||||| | || Sbjct 43137 CAAGCAGGCCGTCCAAGACGTCATTACCGAGGCTGTCAGCATCGAGCAAGAGTTCTTGAC 43196 Query 58217 CGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGA 58276 || || || || || ||||||| |||||| | |||||| | |||||||| Sbjct 43197 TGAGGCACTTCCCTGTGCGCTGCTCGGCATGAACGCCAACTTGATGAAGCAATACATTGA 43256 Query 58277 GTTTGTTGCCGACAGACTTTTGCTCGAACTGATTGGAGAGCGTCATTACAACACGAAAAA 58336 ||| || |||||||| || ||||| || | ||| | ||||| ||| || Sbjct 43257 GTTCGTCGCCGACAGGCTGCTGCTCTCCCTCGGTAACGAGAAGTACTACAAGTCGACCAA 43316 Query 58337 TCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGAAAA 58393 || || ||||| ||| | ||||| || | || ||||| ||||| ||||| || Sbjct 43317 CCCATTCGATTTCATGGAGAACATCTCCCTGGCAGGAAAGACCAACTTCTTCGAGAA 43373 >seq2657 Length=10989 Score = 125 bits (138), Expect = 6e-24 Identities = 415/640 (65%), Gaps = 9/640 (1%) Strand=Plus/Plus Query 22143 TGGTGCGAAGATAATACATGCCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCG 22202 ||||||| || || ||||| || ||||| || || | |||||| | ||| || || | Sbjct 2041 TGGTGCGGAGGTAGTACATTCCGGTCTTGAGGCCGAGCTTCCAGCCAGCAAAGTGCATGG 2100 Query 22203 ACGTCAATTTTCCATAACTCGGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGA 22262 | || | || || | || | ||||| | |||| ||||| ||||||| Sbjct 2101 ATGTGATCTTGCCCATTGTTGGGTCCTTCATGTGGATGTTGAGGGACTGGGATTGATCGA 2160 Query 22263 TAAACGCTCCTCGATCGGCGGCCATATTTATCAATGTACGCATCGACATTTCCCATACGG 22322 | || || || || ||||||||||| | | | || ||| || || ||||| |||| Sbjct 2161 TGAAGGCGCCGCGGTCGGCGGCCATCTGGACGATGGTGCGCTGGGAGATCTCCCAGACGG 2220 Query 22323 TCTTGTACAGTTGCCTGATCTCTAACGGTATCGATTCGATCCTCTGGACGGACCCGTTAT 22382 ||||||| || | |||| || || || ||| |||||| ||| ||| | Sbjct 2221 TCTTGTAGAGGGCCTTGATGTCGGCGGGGATGTTGGGGATATTCTGGATGGAGCCGCCGT 2280 Query 22383 -TGTGTATGATCAAATTTTTAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTG 22441 || | ||||| || || || | ||| ||| | ||| ||| || || || ||| Sbjct 2281 CTGCG-ATGATGCGGTTCTTCATGTTGTCGGACCAGAGACCCATGTCGACCAGGTCCTTG 2339 Query 22442 ACCAGATGACGGTTCACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTG 22501 | ||| |||| || ||||| |||||||||| || ||| ||||| ||| ||||| Sbjct 2340 AGCAGCCAGGGGTTGACGACTTGGAACTCGCCGGCCAGGACACGGCGCGAGTAGATGTTC 2399 Query 22502 GATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGC 22561 || ||| | || ||||| | || ||| || || ||||| | ||| || || || ||| Sbjct 2400 GAGGTGTAGGGCTCGAAGCACTCGTTGAAGCCGAGGATCTGGGAGGTGGAGGCAGTGGGC 2459 Query 22562 ATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCT--TTGAAATTTTACTCTTGAGCA 22619 || || || | || || ||||| | | ||||||| ||| || | |||||| Sbjct 2460 ATGGGTGCAACGAGCAGGGAGTTGCGGACACCGTGCTGCTTG--ATCTGGGCCTTGAGAG 2517 Query 22620 TCGACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGC 22679 |||||||||||| |||| || || || | ||||||| |||||||| | | | | Sbjct 2518 AGTCCCAGTCCCACAGGTCGGTAGGAGTAAC---GCCCCACATGTCGTATTGGAGCTCAC 2574 Query 22680 CGCGACTCGCCGGGCTGCCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGC 22739 | | | ||| || ||||| || ||||| | || | ||| ||| || || Sbjct 2575 CCTTGGACACTGGGGATCCCTCGTAAGTCTCGTATGTGCCGTGAATCTGGGCCAGCTCCA 2634 Query 22740 AGCTCGCCTCCAACGCGCCGTAATATATAGTCTCGAAGAT 22779 | || ||| || |||| || || ||||||||||| Sbjct 2635 CGGAGGCAGTCAAAGCACCGTGGTAGATGGTCTCGAAGAT 2674 >seq2289 Length=32595 Score = 120 bits (132), Expect = 3e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| || || ||||| || ||||| | || ||||| ||||| Sbjct 1872 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACCATCACTTTGGAGGTTGAGTCGTCC 1813 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || || || || ||||||||| ||| | || || |||||| Sbjct 1812 GACACCATCGACAATGTGAAGTCGAAGATCCAGGACAAGGAGGGCATTCCTCCGGACCAG 1753 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| || || ||||| ||||| ||| | || ||| | ||| | ||| || ||| Sbjct 1752 CAGCGCCTGATTTTCGCGGGCAAGCAGCTCGAGGACGGTCGCACTCTCTCCGACTACAAC 1693 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| || || ||||||||||| |||| ||| | || | || |||| Sbjct 1692 ATTCAGAAGGAGTCGACTCTTCACTTGGTCCTTCGTCTTCGCGGTGGTA 1644 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| ||||| || |||||||| || || || ||||| || | || || ||| | || Sbjct 1644 ATGCAGATTTTTGTCAAGACTCTTACGGGAAAGACGATTACGCTTGAGGTGGAATCATCT 1585 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | || | ||||| || || ||||||||| || | || || |||||| Sbjct 1584 GATACCATTGATAACGTCAAGTCGAAGATTCAGGACAAGGAGGGAATTCCTCCGGACCAG 1525 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| || || || ||||| || ||| |||| || ||| || || || ||| Sbjct 1524 CAGCGCCTGATCTTTGCTGGTAAGCAGCTGGAGGATGGCCGCACTCTGTCGGACTACAAC 1465 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 |||||||| || ||||| || ||| |||| || Sbjct 1464 ATTCAAAAGGAGTCGACCCTGCATTTGGTTCT 1433 >seq2358 Length=47611 Score = 104 bits (114), Expect = 2e-17 Identities = 167/240 (70%), Gaps = 4/240 (2%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||| ||||| ||||| ||||| ||||| || |||||| | || || || |||| Sbjct 18193 CATGCAAATCTTCGTGAAGACCCTGACGGGCAAGACTATCACCCTTGAGGTGGAGTCGTC 18134 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||| | | |||| | ||||| | || ||||||||| || | || || ||||| Sbjct 18133 CGATACTATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGACCA 18074 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||| || || ||||| ||||| ||| | || || || | ||||| || Sbjct 18073 GCAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTTTCGGATTACAA 18014 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT----AGAAGCG 31427 ||| || || || || || ||||| |||| || ||||| | || ||| ||||||| Sbjct 18013 CATCCAGAAGGAGTCCACCCTTCACTTGGTCCTGAGACTTCGTGGAGGTGCCAAGAAGCG 17954 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445749020682480