Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._2004NY16_20[genbank_20GCA_5F001630575.1_20201 6-05-27] 3,119 sequences; 31,314,325 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq2657 170 2e-37 seq3051 123 3e-23 >seq2657 Length=10989 Score = 170 bits (188), Expect = 2e-37 Identities = 476/722 (66%), Gaps = 14/722 (2%) Strand=Plus/Plus Query 63189 TCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGAC 63248 |||||||| || || |||||| |||||| ||| ||||| | || ||||| | | | Sbjct 3165 TCGAACTCATCGCCGTAAACATCTGCCAATCCAGGGCATTCGTTGGGGCACATGAGGGTC 3224 Query 63249 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AA 63307 || || |||| | || || || ||||| |||||||| |||||||| ||||| ||| || Sbjct 3225 CAGTCGCCGTTCTTCTCGACACGCTTCATGAAGAGATCCGGAATCCAGAGAGC-ATAGAA 3283 Query 63308 TAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 63367 | || | | | |||||| || || ||||| | | || |||||| | | Sbjct 3284 CAAGTCACGGGCACGGACTTCCTCCTTGCCGTGGTTCTTCCTCAAGTCCAGGAACTCAAA 3343 Query 63368 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 63427 | ||| | ||||| || || | ||| ||||| | | | ||||| || ||||| || || Sbjct 3344 GACATCCGCGTGCCATGGCTCAACGTAGATGGCGAAAGCACCAGGGCGCTTGTTGCCACC 3403 Query 63428 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGA 63487 || || | ||| || |||||||| || | || | | ||| || | ||| ||||| || Sbjct 3404 TTGGTCAACGTACCTTGCGGTGTTGTTGAACACGCGGAGCATAGGGACAATGCCGTTCGA 3463 Query 63488 TATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATA---TTACTAATTGATAG 63544 | || |||||||||| || || | ||| ||||||| ||| | || | || Sbjct 3464 GTTTCCGTTGGTACCGGCAATGTATGCACCAGTGGCACGGATACGGTGGATATTCAAT-- 3521 Query 63545 ACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCC 63604 || || || || || | || ||||| | || || || | ||||||||||| || Sbjct 3522 -CCGATACCTCCAGCAGTCTTTGAGATCATGGCACAAGTCTTGAGTGTGTCATAGATACC 3580 Query 63605 TTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGT 63664 || || ||||| || |||||| | | || ||| || | ||| | | || Sbjct 3581 CTCAATACTATCCTCCTTCATGTCGACCAAGAAGCAGGACGAAAGCTGGGCCTGTGGTGT 3640 Query 63665 TCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTA 63724 || ||||| || | || || |||||||| || || |||| ||| | || ||||| Sbjct 3641 ACCAGCATTGAAGAGTGTTGGGGAAGCGTGTGTGAAGTATTTGGAAGACATGAGGTTGTA 3700 Query 63725 CGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAACA 63783 ||||| || | || |||||| || | ||||| || || || |||||||| | || Sbjct 3701 TGTCTCGATTGTCTTCTCAATATCCTCACCG-TGAATGCCCACCGCAACACGCATAATCA 3759 Query 63784 TGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAG 63843 ||||||| || || ||| ||| ||| | | | | | ||||||| |||| | Sbjct 3760 TGTGCTGTGGCCTCTCAGCAACCTTGCCATCAAGTCGGAGAAGGTAGGATCGCTCCAGGG 3819 Query 63844 TTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAG 63901 | || || || || || | ||| ||||| || || ||||| | | | | || ||||| Sbjct 3820 TCTTGAAGCCGAAGTATTGGTAGTTGAAA--TCACGGTCGTAGAGGACAGCAGAGTTGAG 3877 Query 63902 CT 63903 || Sbjct 3878 CT 3879 >seq3051 Length=56537 Score = 123 bits (136), Expect = 3e-23 Identities = 361/553 (65%), Gaps = 5/553 (1%) Strand=Plus/Minus Query 33278 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTC 33337 ||| || || | |||||||| || | || || || ||||| || || || |||||| | Sbjct 43407 CATGACACCAGTCTTTTGGTAGTCGGCGACGCGCTTCTCGAAGAAGTTGGTCTTTCCTGC 43348 Query 33338 CAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCC 33397 || || || || ||||||||||| || || ||||| ||||| | || | | | Sbjct 43347 CAGGGAGATGTTCTCCATGAAATCGAATGGGTTGGTCGACTTGTAG-TACTTCTCGTTAC 43289 Query 33398 CAATTCAGAA-ATCAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAAT 33456 | | ||| | || || || |||||||| || || ||| ||||||| | | Sbjct 43288 CGAGGGAGAGCAGCAGCCTGTCGGCGACGAACTCAATGTATTGCTTCATCAAGTTGGCGT 43229 Query 33457 TCATTCCTATGAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCG 33516 |||| || | || | ||||| ||| |||| | || ||||| || ||| || | Sbjct 43228 TCATGCCGAGCAGCGCACAGGGAAGTGCCTCAGTCAAGAACTCTTGCTCGATGCTGACAG 43169 Query 33517 CATTTGTTATAATAAATCTAACGGTTTCTTCACTCGGTGGATGTAATAAATGTTTAAACA 33576 | | || || | | |||| | | || || | ||| | || || | Sbjct 43168 CCTCGGTAATGACGTCTTGGACGGCCTGCTTGCTTGGGCGGTGTCTAAGGTGGGAGAAGA 43109 Query 33577 TCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACG 33636 | || ||||| ||| ||| |||||||| || | || | ||||| || || | Sbjct 43108 GGAGGCAGGCGAAGTCGGTGTGGAGACCCTCATCACGGGAGATGAGCTCGTTCGAGAAGG 43049 Query 33637 TGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAA 33696 | || || | ||| ||||||||||| || ||||| || ||||| ||||| || ||||| | Sbjct 43048 TCAGGCCAGCCATGAGGCCACGCTTCTTGAGCCAGAAAATGGAGGCGAAGGAGCCGGAGA 42989 Query 33697 AGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGCTGT 33753 ||||||| || || || ||||| ||||||| || | || || | | | | | Sbjct 42988 AGAAGATACCCTCAACAGCAGCGAAGGCAACGAGACGCTGAGCAAAGGTAGAATCCTTAT 42929 Query 33754 CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGG 33813 | || |||||| | ||||| ||||||||||| || | ||||| || || || |||| Sbjct 42928 CTTGGATCCACCTAACTGCCCAGTCGGCCTTCTTCTTGATGCAAGGAATGGTCTCGATGG 42869 Query 33814 CATTAAAGAGATA 33826 |||| ||||| || Sbjct 42868 CATTGAAGAGGTA 42856 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629793044986320