Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._2004NY16_20[genbank_20GCA_5F001630575.1_20201 6-05-27] 3,119 sequences; 31,314,325 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq2289 96.9 3e-15 seq2358 82.4 6e-11 >seq2289 Length=32595 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCTC 48576 || ||||| || || |||||||||||||||||| || | || | || || | ||||| Sbjct 1436 ACCAAATGCAGGGTCGACTCCTTTTGAATGTTGTAGTCCGACAGAGTG-CGGCCATCCTC 1494 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 |||||||||||| | | || | |||||||| ||| || | | ||||||||| Sbjct 1495 CAGCTGCTTACCAGCAAAGATCAGGCGCTGCTGGTCCGGAGGAATTCCCTCCTTGTCCTG 1554 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 ||| ||| ||||| | |||||||| | || ||| ||| | || || || || Sbjct 1555 AATCTTCGACTTGACGTTATCAATGGTATCAGATGATTCCACCTCAAGCGTAATCGTCTT 1614 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || || ||||| || |||||||||||||| Sbjct 1615 TCCCGTAAGAGTCTTGACAAAAATCTGCAT 1644 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCG-CTCGTCCT 48575 ||| || ||||| ||||||||||| || |||||||| || || | ||| | | |||| Sbjct 979 CACCAAGTGAAGCGTGCTCTCCTTCTGGATGTTGTAGTC-GCTCAGCGTCCTCCCATCCT 1037 Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635 | |||||||| || || |||| | |||||||| ||| || | || ||||| ||| Sbjct 1038 CGAGCTGCTTGCCCGCGAAAATCAGGCGCTGCTGGTCCGGTGGGATACCCTCCTTATCCT 1097 Query 48636 TAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTT 48695 ||| || ||||| | ||||| || | |||||| ||||| || ||||| | Sbjct 1098 GAATCTTGGACTTGACGTTGTCAATGGTGTCCGAAGACTCAACCTCGAGAGTAATGGTCT 1157 Query 48696 TACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 | ||||| | || || || ||||||||||| Sbjct 1158 TTCCGGTCAAGGTCTTGACGAAAATCTGCAT 1188 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCTC 48576 || || ||||| || |||||| ||||||||||| || | | | || || ||||||| Sbjct 1664 ACCAAGTGAAGAGTCGACTCCTTCTGAATGTTGTAGTCGGAGAGAGTG-CGACCGTCCTC 1722 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 |||||||| || || |||| | |||||||| ||| || | | ||||||||| Sbjct 1723 GAGCTGCTTGCCCGCGAAAATCAGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTG 1782 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 || ||| ||| | | | ||||| |||| ||||| ||| | || ||||| || Sbjct 1783 GATCTTCGACTTCACATTGTCGATGGTGTCGGACGACTCAACCTCCAAAGTGATGGTCTT 1842 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || ||||| || || || || |||||||| Sbjct 1843 GCCCGTGAGGGTCTTGACGAAGATCTGCAT 1872 >seq2358 Length=47611 Score = 82.4 bits (90), Expect = 6e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 |||||| || | || | || || ||||| ||| |||||| || ||||||||||| | Sbjct 17965 ACCTCCACGAAGTCTCAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCCG- 18023 Query 48559 CAATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617 || || || | ||||| |||||||| ||| || | || | |||||||| ||| | Sbjct 18024 AAAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGG 18083 Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCG 48677 | | | ||||||||| || || ||||| | | || ||||||| |||||| Sbjct 18084 GAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATAGTATCGGACGACTCCA 18143 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| | || || || || || || || || ||||| || || ||||| Sbjct 18144 CCTCAAGGGTGATAGTCTTGCCCGTCAGGGTCTTCACGAAGATTTGCAT 18192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421235187057119